Single cell analysis of host response to helminth infection reveals the clonal breadth, heterogeneity, and tissue-specific programming of the responding CD4⁺ T cell repertoire

• Ivy K. Brown,

  Roles Data curation, Formal analysis, Investigation, Project administration, Writing – review & editing

  Affiliation Department of Immunology and Genomic Medicine, National Jewish Health, Denver, Colorado, United States of America

  https://orcid.org/0000-0003-3065-1376

  ⨯
• Nathan Dyjack,

  Roles Data curation, Formal analysis

  Affiliation Center for Genes, Environment, and Health, National Jewish Health, Denver, Colorado, United States of America

  https://orcid.org/0000-0001-6944-6252

  ⨯
• Mindy M. Miller,

  Roles Formal analysis, Methodology, Writing – review & editing

  Affiliation Department of Immunology and Genomic Medicine, National Jewish Health, Denver, Colorado, United States of America

  https://orcid.org/0000-0003-4478-409X

  ⨯
• Harsha Krovi,

  Roles Formal analysis

  Affiliation Department of Immunology and Microbiology, University of Colorado Anschutz Medical Campus, Aurora, Colorado, United States of America

  https://orcid.org/0000-0003-4661-617X

  ⨯
• Cydney Rios,

  Roles Data curation, Project administration, Supervision

  Affiliation Center for Genes, Environment, and Health, National Jewish Health, Denver, Colorado, United States of America

  ⨯
• Rachel Woolaver,

  Roles Investigation

  Affiliation Department of Immunology and Microbiology, University of Colorado Anschutz Medical Campus, Aurora, Colorado, United States of America

  https://orcid.org/0000-0002-8107-599X

  ⨯
• Laura Harmacek,

  Roles Investigation

  Affiliation Center for Genes, Environment, and Health, National Jewish Health, Denver, Colorado, United States of America

  ⨯
• Ting-Hui Tu,

  Roles Investigation

  Affiliation Center for Genes, Environment, and Health, National Jewish Health, Denver, Colorado, United States of America

  https://orcid.org/0000-0002-6370-7762

  ⨯
• Brian P. O’Connor,

  Roles Supervision

  Affiliations Center for Genes, Environment, and Health, National Jewish Health, Denver, Colorado, United States of America, Department of Immunology and Microbiology, University of Colorado Anschutz Medical Campus, Aurora, Colorado, United States of America, Department of Pediatrics, National Jewish Health, Denver, Colorado, United States of America

  https://orcid.org/0000-0002-4776-2622

  ⨯
• Thomas Danhorn,

  Roles Data curation, Formal analysis

  Affiliation Center for Genes, Environment, and Health, National Jewish Health, Denver, Colorado, United States of America

  https://orcid.org/0000-0002-3861-8602

  ⨯
• Brian Vestal,

  Roles Data curation, Formal analysis

  Affiliation Center for Genes, Environment, and Health, National Jewish Health, Denver, Colorado, United States of America

  https://orcid.org/0000-0002-3772-1691

  ⨯
• Laurent Gapin,

  Roles Supervision, Writing – review & editing

  Affiliation Department of Immunology and Microbiology, University of Colorado Anschutz Medical Campus, Aurora, Colorado, United States of America

  https://orcid.org/0000-0001-9730-5174

  ⨯
• Clemencia Pinilla,

  Roles Data curation, Methodology, Supervision, Writing – review & editing

  Affiliation Florida International University, Port Saint Lucie, Florida, United States of America

  ⨯
• Max A. Seibold,

  Roles Data curation, Formal analysis, Funding acquisition, Resources, Supervision, Writing – review & editing

  Affiliations Center for Genes, Environment, and Health, National Jewish Health, Denver, Colorado, United States of America, Department of Pediatrics, National Jewish Health, Denver, Colorado, United States of America, Division of Pulmonary Sciences and Critical Care Medicine, University of Colorado School of Medicine, Aurora, Colorado, United States of America

  https://orcid.org/0000-0002-8685-4263

  ⨯
• James Scott-Browne,

  Roles Formal analysis, Investigation, Methodology, Writing – review & editing

  Affiliations Department of Immunology and Genomic Medicine, National Jewish Health, Denver, Colorado, United States of America, Center for Genes, Environment, and Health, National Jewish Health, Denver, Colorado, United States of America, Department of Immunology and Microbiology, University of Colorado Anschutz Medical Campus, Aurora, Colorado, United States of America

  ⨯
• Radleigh G. Santos,

  Roles Data curation, Formal analysis, Investigation, Methodology, Software, Writing – review & editing

  Affiliation Department of Mathematics, Nova Southeastern University, Fort Lauderdale, Florida, United States of America

  https://orcid.org/0000-0002-8194-5502

  ⨯
•  [ ... ],
• R. Lee Reinhardt

  Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Project administration, Resources, Supervision, Writing – original draft

  * E-mail: ReinhardtL@NJHealth.org

  Affiliations Department of Immunology and Genomic Medicine, National Jewish Health, Denver, Colorado, United States of America, Department of Immunology and Microbiology, University of Colorado Anschutz Medical Campus, Aurora, Colorado, United States of America

  https://orcid.org/0000-0001-7798-9732

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