Viral genomic, metagenomic and human transcriptomic characterization and prediction of the clinical forms of COVID-19

• Christophe Rodriguez ,

  Contributed equally to this work with: Christophe Rodriguez, Nicolas de Prost

  Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: christophe.rodriguez@aphp.fr

  Affiliations Department of Microbiology, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France, Team “Viruses, Hepatology, Cancer”, Institut Mondor de Recherche Biomédicale (IMRB), INSERM U955, Université Paris-Est, Créteil, France

  https://orcid.org/0000-0002-9817-5006

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• Nicolas de Prost ,

  Contributed equally to this work with: Christophe Rodriguez, Nicolas de Prost

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Writing – original draft, Writing – review & editing

  Affiliations Médecine Intensive Réanimation, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France, CARMAS Clinical Research Group, Université Paris-Est, Créteil, France

  https://orcid.org/0000-0002-4833-4320

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• Slim Fourati,

  Roles Conceptualization, Funding acquisition, Methodology, Validation, Writing – original draft, Writing – review & editing

  Affiliations Department of Microbiology, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France, Team “Viruses, Hepatology, Cancer”, Institut Mondor de Recherche Biomédicale (IMRB), INSERM U955, Université Paris-Est, Créteil, France

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• Claudie Lamoureux,

  Roles Project administration, Validation, Writing – original draft

  Affiliation Department of Microbiology, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France

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• Guillaume Gricourt,

  Roles Data curation, Formal analysis, Methodology, Software

  Affiliations Department of Microbiology, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France, Team “Viruses, Hepatology, Cancer”, Institut Mondor de Recherche Biomédicale (IMRB), INSERM U955, Université Paris-Est, Créteil, France

  https://orcid.org/0000-0003-0143-5535

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• Melissa N’debi,

  Roles Formal analysis, Methodology

  Affiliations Department of Microbiology, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France, Team “Viruses, Hepatology, Cancer”, Institut Mondor de Recherche Biomédicale (IMRB), INSERM U955, Université Paris-Est, Créteil, France

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• Florence Canoui-Poitrine,

  Roles Conceptualization, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Université Paris-Est-Créteil, INSERM, IMRB, Créteil, France, Public Health and Clinical Research Unit, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France

  https://orcid.org/0000-0001-9970-6051

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• Isaac Désveaux,

  Roles Project administration

  Affiliation Department of Microbiology, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France

  https://orcid.org/0000-0003-1924-6396

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• Oriane Picard,

  Roles Project administration

  Affiliation Department of Microbiology, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France

  https://orcid.org/0000-0001-5471-4410

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• Vanessa Demontant,

  Roles Methodology, Resources

  Affiliation Department of Microbiology, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France

  ⨯
• Elisabeth Trawinski,

  Roles Methodology, Resources

  Affiliation Department of Microbiology, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France

  ⨯
• Raphaël Lepeule,

  Roles Investigation

  Affiliation Department of Microbiology, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France

  ⨯
• Laure Surgers,

  Roles Conceptualization, Investigation, Resources, Supervision, Validation, Visualization

  Affiliation Department of Microbiology, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France

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• William Vindrios,

  Roles Investigation

  Affiliation Department of Clinical Immunology and Infectious Diseases, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France

  ⨯
• Jean-Daniel Lelièvre,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Clinical Immunology and Infectious Diseases, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France

  https://orcid.org/0000-0002-8182-3628

  ⨯
• Nicolas Mongardon,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Anesthesiology and Surgical Intensive Care, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France

  https://orcid.org/0000-0003-2756-4052

  ⨯
• Olivier Langeron,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Anesthesiology and Surgical Intensive Care, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France

  https://orcid.org/0000-0001-5965-7128

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• José L. Cohen,

  Roles Visualization, Writing – review & editing

  Affiliations Center for Clinical Investigation and Biotherapies, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France, Team “Immunoregulation and biotherapies”, Institut Mondor de Recherche Biomédicale, INSERM U955, Université Paris-Est, Créteil, France

  https://orcid.org/0000-0002-5077-6726

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• Armand Mekontso-Dessap,

  Roles Investigation, Writing – review & editing

  Affiliations Médecine Intensive Réanimation, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France, CARMAS Clinical Research Group, Université Paris-Est, Créteil, France

  https://orcid.org/0000-0001-5961-5577

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• Paul-Louis Woerther,

  Roles Conceptualization, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Department of Microbiology, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France, Team DYNAMIC, Université Paris-Est, Créteil, France

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•  [ ... ],
• Jean-Michel Pawlotsky

  Roles Visualization, Writing – original draft, Writing – review & editing

  Affiliations Department of Microbiology, Hôpitaux Universitaires Henri Mondor, Assistance Publique-Hôpitaux de Paris (AP-HP), Créteil, France, Team “Viruses, Hepatology, Cancer”, Institut Mondor de Recherche Biomédicale (IMRB), INSERM U955, Université Paris-Est, Créteil, France

  https://orcid.org/0000-0003-0745-7559

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