SARS-CoV-2 outbreak in a tri-national urban area is dominated by a B.1 lineage variant linked to a mass gathering event

• Madlen Stange ,

  Contributed equally to this work with: Madlen Stange, Alfredo Mari, Tim Roloff, Helena MB Seth-Smith

  Roles Data curation, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland, Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland, Swiss Institute for Bioinformatics, Basel, Switzerland

  https://orcid.org/0000-0002-4559-2535

  ⨯
• Alfredo Mari ,

  Contributed equally to this work with: Madlen Stange, Alfredo Mari, Tim Roloff, Helena MB Seth-Smith

  Roles Data curation, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft

  Affiliations Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland, Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland, Swiss Institute for Bioinformatics, Basel, Switzerland

  https://orcid.org/0000-0002-3871-088X

  ⨯
• Tim Roloff ,

  Contributed equally to this work with: Madlen Stange, Alfredo Mari, Tim Roloff, Helena MB Seth-Smith

  Roles Data curation, Formal analysis, Methodology, Software, Writing – original draft, Writing – review & editing

  Affiliations Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland, Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland, Swiss Institute for Bioinformatics, Basel, Switzerland

  https://orcid.org/0000-0003-3435-4723

  ⨯
• Helena MB Seth-Smith ,

  Contributed equally to this work with: Madlen Stange, Alfredo Mari, Tim Roloff, Helena MB Seth-Smith

  Roles Data curation, Investigation, Methodology, Software, Validation, Writing – original draft, Writing – review & editing

  Affiliations Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland, Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland, Swiss Institute for Bioinformatics, Basel, Switzerland

  https://orcid.org/0000-0002-6082-5114

  ⨯
• Michael Schweitzer,

  Roles Data curation, Formal analysis, Investigation

  Affiliations Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland, Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland

  ⨯
• Myrta Brunner,

  Roles Formal analysis, Visualization, Writing – review & editing

  Affiliation Human Geography, University of Basel, Basel, Switzerland

  https://orcid.org/0000-0002-9694-5396

  ⨯
• Karoline Leuzinger,

  Roles Resources, Writing – review & editing

  Affiliations Clinical Virology, University Hospital Basel, Basel, Switzerland, Transplantation & Clinical Virology, Department of Biomedicine, University of Basel, Basel, Switzerland

  ⨯
• Kirstine K. Søgaard,

  Roles Data curation, Investigation, Writing – review & editing

  Affiliations Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland, Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland

  ⨯
• Alexander Gensch,

  Roles Project administration, Resources, Writing – review & editing

  Affiliation Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland

  ⨯
• Sarah Tschudin-Sutter,

  Roles Resources, Writing – review & editing

  Affiliation Infectious Diseases and Hospital Epidemiology, University Hospital Basel and University of Basel, Basel, Switzerland

  https://orcid.org/0000-0003-4875-5368

  ⨯
• Simon Fuchs,

  Roles Project administration, Resources, Writing – review & editing

  Affiliation Health Services for the City of Basel, Basel, Switzerland

  ⨯
• Julia Bielicki,

  Roles Project administration, Resources, Writing – review & editing

  Affiliation Pediatric Infectious Diseases, University Children’s Hospital Basel, Basel, Switzerland

  ⨯
• Hans Pargger,

  Roles Project administration, Resources, Writing – review & editing

  Affiliation Intensive Care Unit, University Hospital Basel, Basel, Switzerland

  https://orcid.org/0000-0002-1234-7568

  ⨯
• Martin Siegemund,

  Roles Project administration, Resources, Writing – review & editing

  Affiliation Intensive Care Unit, University Hospital Basel, Basel, Switzerland

  https://orcid.org/0000-0002-2013-4140

  ⨯
• Christian H. Nickel,

  Roles Project administration, Resources, Writing – review & editing

  Affiliation Emergency Medicine, University Hospital Basel, Basel, Switzerland

  ⨯
• Roland Bingisser,

  Roles Project administration, Resources, Writing – review & editing

  Affiliation Emergency Medicine, University Hospital Basel, Basel, Switzerland

  https://orcid.org/0000-0001-8223-9792

  ⨯
• Michael Osthoff,

  Roles Project administration, Resources, Writing – review & editing

  Affiliation Internal Medicine, University Hospital Basel, Basel, Switzerland

  https://orcid.org/0000-0001-5439-957X

  ⨯
• Stefano Bassetti,

  Roles Project administration, Resources, Writing – review & editing

  Affiliation Internal Medicine, University Hospital Basel, Basel, Switzerland

  ⨯
• Rita Schneider-Sliwa,

  Roles Project administration, Resources, Writing – review & editing

  Affiliation Human Geography, University of Basel, Basel, Switzerland

  https://orcid.org/0000-0003-1481-2467

  ⨯
• Manuel Battegay,

  Roles Project administration, Resources, Writing – review & editing

  Affiliation Infectious Diseases and Hospital Epidemiology, University Hospital Basel and University of Basel, Basel, Switzerland

  ⨯
• Hans H. Hirsch,

  Roles Project administration, Resources, Writing – review & editing

  Affiliations Clinical Virology, University Hospital Basel, Basel, Switzerland, Transplantation & Clinical Virology, Department of Biomedicine, University of Basel, Basel, Switzerland, Infectious Diseases and Hospital Epidemiology, University Hospital Basel and University of Basel, Basel, Switzerland

  https://orcid.org/0000-0003-0883-0423

  ⨯
•  [ ... ],
• Adrian Egli

  Roles Conceptualization, Data curation, Funding acquisition, Project administration, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: adrian.egli@usb.ch

  Affiliations Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland, Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland

  https://orcid.org/0000-0002-3564-8603

  ⨯
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