Gnotobiotic rainbow trout (Oncorhynchus mykiss) model reveals endogenous bacteria that protect against Flavobacterium columnare infection

• David Pérez-Pascual ,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: david.perezpascual@pasteur.fr (DPP); jmghigo@pasteur.fr (JMG)

  Affiliation Unité de Génétique des Biofilms, Institut Pasteur, UMR CNRS2001, Paris, France

  ⨯
• Sol Vendrell-Fernández,

  Roles Investigation, Methodology, Visualization, Writing – review & editing

  Affiliation Unité de Génétique des Biofilms, Institut Pasteur, UMR CNRS2001, Paris, France

  https://orcid.org/0000-0003-0153-8454

  ⨯
• Bianca Audrain,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliation Unité de Génétique des Biofilms, Institut Pasteur, UMR CNRS2001, Paris, France

  ⨯
• Joaquín Bernal-Bayard,

  Roles Investigation, Methodology, Writing – review & editing

  Current address: Departamento de Genética, Facultad de Biología, Universidad de Sevilla, Sevilla, Spain

  Affiliation Unité de Génétique des Biofilms, Institut Pasteur, UMR CNRS2001, Paris, France

  https://orcid.org/0000-0003-1199-3629

  ⨯
• Rafael Patiño-Navarrete,

  Roles Data curation, Methodology

  Affiliation Ecologie et Evolution de la Résistance aux Antibiotiques, Institut Pasteur-APHP University Paris Sud, Paris, France

  https://orcid.org/0000-0003-4226-8374

  ⨯
• Vincent Petit,

  Roles Resources, Writing – review & editing

  Affiliation AQUALANDE, Gué de Bern, Pissos, France

  https://orcid.org/0000-0002-0264-6986

  ⨯
• Dimitri Rigaudeau,

  Roles Resources, Writing – review & editing

  Affiliation Unité Infectiologie Expérimentale Rongeurs et Poissons, INRAE, Université Paris-Saclay, Jouy-en-Josas, France

  ⨯
• Jean-Marc Ghigo

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: david.perezpascual@pasteur.fr (DPP); jmghigo@pasteur.fr (JMG)

  Affiliation Unité de Génétique des Biofilms, Institut Pasteur, UMR CNRS2001, Paris, France

  https://orcid.org/0000-0001-6528-118X

  ⨯