Baseline T cell immune phenotypes predict virologic and disease control upon SARS-CoV infection in Collaborative Cross mice

• Jessica B. Graham,

  Roles Investigation, Writing – original draft, Writing – review & editing

  Affiliation Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, Unites States of America

  https://orcid.org/0000-0001-6579-0443

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• Jessica L. Swarts,

  Roles Investigation, Writing – review & editing

  Affiliation Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, Unites States of America

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• Sarah R. Leist,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America

  https://orcid.org/0000-0002-4989-5381

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• Alexandra Schäfer,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America

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• Vineet D. Menachery,

  Roles Investigation, Writing – review & editing

  Affiliations Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America, Department of Microbiology and Immunology, University of Texas Medical Center, Galveston, Texas, Unites States of America

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• Lisa E. Gralinski,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America

  https://orcid.org/0000-0003-1374-8002

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• Sophia Jeng,

  Roles Data curation, Formal analysis, Writing – review & editing

  Affiliations OHSU Knight Cancer Institute, Oregon Health & Science University, Portland, Oregon, Unites States of America, Oregon Clinical and Translational Research Institute, Oregon Health & Science University, Portland, Oregon, Unites States of America

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• Darla R. Miller,

  Roles Conceptualization, Methodology, Resources, Writing – review & editing

  Affiliations Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America, Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America

  https://orcid.org/0000-0002-0781-7254

  ⨯
• Michael A. Mooney,

  Roles Data curation, Formal analysis, Resources, Writing – review & editing

  Affiliations Oregon Clinical and Translational Research Institute, Oregon Health & Science University, Portland, Oregon, Unites States of America, Division of Bioinformatics and Computational Biology, Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, Oregon, Unites States of America

  https://orcid.org/0000-0003-1372-8722

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• Shannon K. McWeeney,

  Roles Conceptualization, Data curation, Formal analysis, Resources, Supervision, Writing – review & editing

  Affiliations OHSU Knight Cancer Institute, Oregon Health & Science University, Portland, Oregon, Unites States of America, Oregon Clinical and Translational Research Institute, Oregon Health & Science University, Portland, Oregon, Unites States of America, Division of Bioinformatics and Computational Biology, Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, Oregon, Unites States of America

  https://orcid.org/0000-0001-8333-6607

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• Martin T. Ferris,

  Roles Methodology

  Affiliation Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America

  https://orcid.org/0000-0003-1241-6268

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• Fernando Pardo-Manuel de Villena,

  Roles Conceptualization, Methodology, Resources, Writing – review & editing

  Affiliations Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America, Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America

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• Mark T. Heise,

  Roles Funding acquisition, Supervision, Writing – review & editing

  Affiliations Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America, Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America

  https://orcid.org/0000-0001-5829-8477

  ⨯
• Ralph S. Baric ,

  Contributed equally to this work with: Ralph S. Baric, Jennifer M. Lund

  Roles Conceptualization, Funding acquisition, Supervision, Writing – review & editing

  Affiliation Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, Unites States of America

  https://orcid.org/0000-0001-6827-8701

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• Jennifer M. Lund

  Contributed equally to this work with: Ralph S. Baric, Jennifer M. Lund

  Roles Conceptualization, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: jlund@fredhutch.org

  Affiliations Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, Unites States of America, Department of Global Health, University of Washington, Seattle, Wasington, Unites States of America

  https://orcid.org/0000-0003-3284-979X

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