Experimental and mathematical insights on the interactions between poliovirus and a defective interfering genome

• Yuta Shirogane ,

  Contributed equally to this work with: Yuta Shirogane, Elsa Rousseau, Jakub Voznica

  Roles Conceptualization, Data curation, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Department of Microbiology and Immunology, University of California, San Francisco, California, United States of America, Department of Virology, Faculty of Medicine, Kyushu University, Fukuoka, Japan

  https://orcid.org/0000-0002-4284-0310

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• Elsa Rousseau ,

  Contributed equally to this work with: Yuta Shirogane, Elsa Rousseau, Jakub Voznica

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Department of Industrial and Applied Genomics, AI and Cognitive Software Division, IBM Almaden Research Center, San Jose, California, United States of America, NSF Center for Cellular Construction, University of California, San Francisco, California, United States of America

  https://orcid.org/0000-0001-7013-6024

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• Jakub Voznica ,

  Contributed equally to this work with: Yuta Shirogane, Elsa Rousseau, Jakub Voznica

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Software, Validation, Writing – review & editing

  Affiliations Department of Microbiology and Immunology, University of California, San Francisco, California, United States of America, ENS Cachan, Université Paris-Saclay, Cachan, France

  https://orcid.org/0000-0002-0530-5837

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• Yinghong Xiao,

  Roles Investigation, Methodology, Validation, Writing – review & editing

  Affiliation Department of Microbiology and Immunology, University of California, San Francisco, California, United States of America

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• Weiheng Su,

  Roles Investigation, Methodology, Validation, Writing – review & editing

  Affiliations Department of Microbiology and Immunology, University of California, San Francisco, California, United States of America, National Engineering Laboratory for AIDS Vaccine, School of Life Sciences, Jilin University, Changchun, China

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• Adam Catching,

  Roles Investigation, Methodology, Validation, Writing – review & editing

  Affiliation Department of Microbiology and Immunology, University of California, San Francisco, California, United States of America

  https://orcid.org/0000-0002-9797-7701

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• Zachary J. Whitfield,

  Roles Investigation, Methodology, Validation, Writing – review & editing

  Affiliation Department of Microbiology and Immunology, University of California, San Francisco, California, United States of America

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• Igor M. Rouzine,

  Roles Conceptualization, Formal analysis, Methodology, Supervision, Validation, Writing – review & editing

  Current address: Immunogenetics, Sechenov Institute of Evolutionary Physiology and Biochemistry RAS, Saint-Petersburg, Russia

  Affiliations Department of Microbiology and Immunology, University of California, San Francisco, California, United States of America, Laboratoire de Biologie Computationnelle et Quantitative, Sorbonne Universite, Institut de Biologie Paris-Seine, Paris, France

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• Simone Bianco ,

  Roles Conceptualization, Funding acquisition, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: sbianco@us.ibm.com (SB); raul.andino@ucsf.edu (RA)

  Affiliations Department of Industrial and Applied Genomics, AI and Cognitive Software Division, IBM Almaden Research Center, San Jose, California, United States of America, NSF Center for Cellular Construction, University of California, San Francisco, California, United States of America

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• Raul Andino

  Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Project administration, Resources, Supervision, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: sbianco@us.ibm.com (SB); raul.andino@ucsf.edu (RA)

  Affiliation Department of Microbiology and Immunology, University of California, San Francisco, California, United States of America

  https://orcid.org/0000-0001-5503-9349

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