Gallbladder carriage generates genetic variation and genome degradation in Salmonella Typhi

• Pham Thanh Duy,

  Roles Formal analysis, Investigation, Methodology, Visualization, Writing – original draft

  Affiliations The Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam, Centre for Tropical Medicine, University of Oxford, Oxford, United Kingdom

  https://orcid.org/0000-0001-7029-9210

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• Nga Tran Vu Thieu,

  Roles Data curation, Formal analysis, Visualization

  Affiliation The Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam

  ⨯
• To Nguyen Thi Nguyen,

  Roles Conceptualization, Investigation, Methodology

  Affiliation The Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam

  ⨯
• Ho Ngoc Dan Thanh,

  Roles Methodology, Resources

  Affiliation The Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam

  ⨯
• Sabina Dongol,

  Roles Conceptualization, Investigation, Methodology

  Affiliation Oxford University Clinical Research Unit, Patan Academy of Health Sciences, Kathmandu, Nepal

  ⨯
• Abhilasha Karkey,

  Roles Conceptualization, Investigation, Methodology

  Affiliation Oxford University Clinical Research Unit, Patan Academy of Health Sciences, Kathmandu, Nepal

  https://orcid.org/0000-0002-5179-650X

  ⨯
• Megan Carey,

  Roles Investigation, Writing – review & editing

  Affiliation Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID) Department of Medicine, University of Cambridge, Cambridge, United Kingdom

  https://orcid.org/0000-0002-7797-9080

  ⨯
• Buddha Basnyat,

  Roles Methodology, Supervision

  Affiliation Oxford University Clinical Research Unit, Patan Academy of Health Sciences, Kathmandu, Nepal

  https://orcid.org/0000-0002-1125-2743

  ⨯
• Gordon Dougan,

  Roles Conceptualization, Writing – review & editing

  Affiliation Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID) Department of Medicine, University of Cambridge, Cambridge, United Kingdom

  ⨯
• Maia A. Rabaa ,

  Roles Investigation, Supervision, Writing – review & editing

  ¶‡ These authors are joint senior authors on this work.

  Affiliations The Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam, Centre for Tropical Medicine, University of Oxford, Oxford, United Kingdom

  https://orcid.org/0000-0003-0529-2228

  ⨯
• Stephen Baker

  Roles Conceptualization, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: sgb47@medschl.cam.ac.uk

  ¶‡ These authors are joint senior authors on this work.

  Affiliation Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID) Department of Medicine, University of Cambridge, Cambridge, United Kingdom

  https://orcid.org/0000-0003-1308-5755

  ⨯