Characterising the epidemic spread of influenza A/H3N2 within a city through phylogenetics

• Nicola F. Müller ,

  Roles Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: nicola.felix.mueller@gmail.com (NFM); tanja.stadler@bsse.ethz.ch (TS)

  Affiliations ETH Zürich, Department of Biosystems Science and Engineering, 4058 Basel, Switzerland, Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland

  https://orcid.org/0000-0002-2927-1002

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• Daniel Wüthrich,

  Roles Data curation, Validation, Writing – review & editing

  Affiliations Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland, Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland, Department of Biomedicine, University of Basel, Basel, Switzerland

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• Nina Goldman,

  Roles Data curation

  Affiliation Human Geography, Department of Environmental Sciences, University of Basel, Basel, Switzerland

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• Nadine Sailer,

  Roles Data curation, Writing – review & editing

  Affiliation Human Geography, Department of Environmental Sciences, University of Basel, Basel, Switzerland

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• Claudia Saalfrank,

  Roles Data curation, Writing – review & editing

  Affiliation Human Geography, Department of Environmental Sciences, University of Basel, Basel, Switzerland

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• Myrta Brunner,

  Roles Data curation, Writing – review & editing

  Affiliation Human Geography, Department of Environmental Sciences, University of Basel, Basel, Switzerland

  https://orcid.org/0000-0002-9694-5396

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• Noémi Augustin,

  Roles Data curation, Writing – review & editing

  Affiliation Human Geography, Department of Environmental Sciences, University of Basel, Basel, Switzerland

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• Helena MB Seth-Smith,

  Roles Data curation, Validation, Writing – review & editing

  Affiliations Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland, Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland, Department of Biomedicine, University of Basel, Basel, Switzerland

  https://orcid.org/0000-0002-6082-5114

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• Yvonne Hollenstein,

  Roles Data curation, Writing – review & editing

  Affiliations Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland, Department of Biomedicine, University of Basel, Basel, Switzerland

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• Mohammedyaseen Syedbasha,

  Roles Data curation, Writing – review & editing

  Affiliations Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland, Department of Biomedicine, University of Basel, Basel, Switzerland

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• Daniela Lang,

  Roles Data curation, Writing – review & editing

  Affiliations Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland, Department of Biomedicine, University of Basel, Basel, Switzerland

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• Richard A. Neher,

  Roles Methodology, Writing – review & editing

  Affiliations Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland, Biozentrum, University of Basel, Basel, Switzerland

  https://orcid.org/0000-0003-2525-1407

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• Olivier Dubuis,

  Roles Data curation, Writing – review & editing

  Affiliation Viollier AG, Allschwil, Switzerland

  ⨯
• Michael Naegele,

  Roles Data curation, Writing – review & editing

  Affiliation Viollier AG, Allschwil, Switzerland

  ⨯
• Andreas Buser,

  Roles Data curation, Writing – review & editing

  Affiliation Regional Blood Transfusion Service, Swiss Red Cross, Basel, Switzerland

  https://orcid.org/0000-0002-7942-6746

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• Christian H. Nickel,

  Roles Data curation, Writing – review & editing

  Affiliation Emergency Department, University Hospital Basel, Basel, Switzerland

  ⨯
• Nicole Ritz,

  Roles Data curation, Writing – review & editing

  Affiliation Pediatric Infectious Diseases and Vaccinology, University Children’s Hospital Basel and University of Basel, Basel Switzerland

  https://orcid.org/0000-0002-1498-1685

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• Andreas Zeller,

  Roles Data curation, Writing – review & editing

  Affiliation Institute for Family Medicine, University of Basel, Basel, Switzerland

  https://orcid.org/0000-0002-6170-8745

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• Brian M. Lang,

  Roles Formal analysis, Methodology, Software, Writing – review & editing

  Affiliations ETH Zürich, Department of Biosystems Science and Engineering, 4058 Basel, Switzerland, Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland

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• James Hadfield,

  Roles Formal analysis, Software, Visualization, Writing – review & editing

  Affiliation Fred Hutchinson Cancer Research Center, Seattle, USA

  ⨯
• Trevor Bedford,

  Roles Methodology, Writing – review & editing

  Affiliation Fred Hutchinson Cancer Research Center, Seattle, USA

  ⨯
• Manuel Battegay,

  Roles Conceptualization, Data curation, Funding acquisition, Methodology, Supervision, Writing – review & editing

  Affiliations Department of Biomedicine, University of Basel, Basel, Switzerland, Infectious Diseases and Hospital Epidemiology, University Hospital Basel, Basel, Switzerland

  https://orcid.org/0000-0002-6638-3679

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• Rita Schneider-Sliwa,

  Roles Conceptualization, Funding acquisition, Methodology, Resources, Supervision, Writing – review & editing

  Affiliation Human Geography, Department of Environmental Sciences, University of Basel, Basel, Switzerland

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• Adrian Egli ,

  Contributed equally to this work with: Adrian Egli, Tanja Stadler

  Roles Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Writing – review & editing

  Affiliations Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland, Department of Biomedicine, University of Basel, Basel, Switzerland

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•  [ ... ],
• Tanja Stadler

  Contributed equally to this work with: Adrian Egli, Tanja Stadler

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: nicola.felix.mueller@gmail.com (NFM); tanja.stadler@bsse.ethz.ch (TS)

  Affiliations ETH Zürich, Department of Biosystems Science and Engineering, 4058 Basel, Switzerland, Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland

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