Pathogen to commensal? Longitudinal within-host population dynamics, evolution, and adaptation during a chronic >16-year Burkholderia pseudomallei infection

• Talima Pearson,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Pathogen & Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America

  http://orcid.org/0000-0003-3696-041X

  ⨯
• Jason W. Sahl,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Supervision, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Pathogen & Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America

  ⨯
• Crystal M. Hepp,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Supervision, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Pathogen & Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America, School of Informatics, Computing, and Cyber Systems, Northern Arizona University, Flagstaff, Arizona, United States of America

  http://orcid.org/0000-0002-0612-3648

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• Karthik Handady,

  Roles Data curation, Formal analysis, Writing – review & editing

  Affiliation Pathogen & Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America

  http://orcid.org/0000-0003-4450-4457

  ⨯
• Heidie Hornstra,

  Roles Data curation, Formal analysis, Project administration, Writing – review & editing

  Affiliation Pathogen & Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America

  http://orcid.org/0000-0002-0988-0548

  ⨯
• Adam J. Vazquez,

  Roles Data curation, Formal analysis, Writing – review & editing

  Affiliation Pathogen & Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America

  http://orcid.org/0000-0001-8625-3436

  ⨯
• Erik Settles,

  Roles Data curation, Formal analysis, Investigation, Methodology, Project administration, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Pathogen & Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America

  http://orcid.org/0000-0003-4331-3683

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• Mark Mayo,

  Roles Data curation, Project administration, Supervision, Writing – review & editing

  Affiliation Global and Tropical Health Division, Menzies School of Health Research, Darwin, Northern Territory, Australia

  http://orcid.org/0000-0002-9413-0142

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• Mirjam Kaestli,

  Roles Data curation, Project administration, Supervision, Writing – review & editing

  Affiliation Global and Tropical Health Division, Menzies School of Health Research, Darwin, Northern Territory, Australia

  http://orcid.org/0000-0002-6053-5141

  ⨯
• Charles H. D. Williamson,

  Roles Data curation, Formal analysis, Methodology, Supervision, Writing – review & editing

  Affiliation Pathogen & Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America

  ⨯
• Erin P. Price,

  Roles Data curation, Formal analysis, Investigation, Writing – review & editing

  Current address: GeneCology Research Centre and Sunshine Coast Health Institute, University of the Sunshine Coast, Queensland, Australia

  Affiliation Pathogen & Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America

  http://orcid.org/0000-0002-1079-4882

  ⨯
• Derek S. Sarovich,

  Roles Data curation, Formal analysis, Investigation, Methodology, Writing – review & editing

  Current address: GeneCology Research Centre and Sunshine Coast Health Institute, University of the Sunshine Coast, Queensland, Australia

  Affiliation Pathogen & Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America

  http://orcid.org/0000-0002-6944-3980

  ⨯
• James M. Cook,

  Roles Methodology, Writing – review & editing

  Affiliation Pathogen & Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America

  ⨯
• Spenser R. Wolken,

  Roles Methodology, Writing – review & editing

  Affiliation Pathogen & Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America

  http://orcid.org/0000-0002-1968-9632

  ⨯
• Richard A. Bowen,

  Roles Formal analysis, Investigation, Methodology, Writing – review & editing

  Affiliation Department of Biomedical Sciences, Colorado State University, Colorado, United States of America

  ⨯
• Apichai Tuanyok,

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Writing – review & editing

  Current address: Department of Infectious Diseases & Immunology, Emerging Pathogens Institute, University of Florida, Florida, United States of America

  Affiliation Pathogen & Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America

  http://orcid.org/0000-0002-3380-0448

  ⨯
• Jeffrey T. Foster,

  Roles Data curation, Supervision, Writing – review & editing

  Affiliation Pathogen & Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America

  ⨯
• Kevin P. Drees,

  Roles Data curation, Methodology, Writing – review & editing

  Current address: Department of Molecular, Cellular and Biomedical Sciences, University of New Hampshire, Durham, New Hampshire, United States of America

  Affiliation Pathogen & Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America

  http://orcid.org/0000-0001-6769-333X

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• Timothy J. Kidd,

  Roles Data curation, Resources, Writing – review & editing

  Affiliation School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, Queensland, Australia

  http://orcid.org/0000-0002-6135-6364

  ⨯
• Scott C. Bell,

  Roles Data curation, Resources, Writing – review & editing

  Affiliation Department of Thoracic Medicine, The Prince Charles Hospital, Chermside, and QIMR Berghofer Medical Research Institute, Queensland, Australia

  http://orcid.org/0000-0001-8651-7139

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• Bart J. Currie,

  Roles Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  Affiliations Global and Tropical Health Division, Menzies School of Health Research, Darwin, Northern Territory, Australia, Infectious Diseases Department and Northern Territory Medical Program, Royal Darwin Hospital, Darwin, Northern Territory, Australia

  http://orcid.org/0000-0002-8878-8837

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•  [ ... ],
• Paul Keim

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: Paul.Keim@nau.edu

  Affiliation Pathogen & Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America

  http://orcid.org/0000-0003-0089-5820

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