Deep sequence analysis of HIV adaptation following vertical transmission reveals the impact of immune pressure on the evolution of HIV

• Jennifer Currenti,

  Roles Data curation, Formal analysis, Methodology, Visualization, Writing – original draft

  Affiliation School of Human Sciences, University of Western Australia, Crawley, Western Australia, Australia

  http://orcid.org/0000-0003-4609-587X

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• Abha Chopra ,

  Contributed equally to this work with: Abha Chopra, Mina John, Shay Leary

  Roles Methodology, Supervision, Writing – review & editing

  Affiliation Institute for Immunology and Infectious Diseases, Murdoch University, Murdoch, Western Australia, Australia

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• Mina John ,

  Contributed equally to this work with: Abha Chopra, Mina John, Shay Leary

  Roles Conceptualization, Methodology, Writing – review & editing

  Affiliations Institute for Immunology and Infectious Diseases, Murdoch University, Murdoch, Western Australia, Australia, Department of Clinical Immunology, Royal Perth Hospital, Perth, Western Australia, Australia

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• Shay Leary ,

  Contributed equally to this work with: Abha Chopra, Mina John, Shay Leary

  Roles Formal analysis, Software, Visualization

  Affiliation Institute for Immunology and Infectious Diseases, Murdoch University, Murdoch, Western Australia, Australia

  ⨯
• Elizabeth McKinnon,

  Roles Formal analysis

  Current address: Telethon Kids Institute, Nedlands, Western Australia, Australia

  Affiliation Institute for Immunology and Infectious Diseases, Murdoch University, Murdoch, Western Australia, Australia

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• Eric Alves,

  Roles Data curation, Formal analysis, Methodology, Visualization, Writing – review & editing

  Affiliation School of Human Sciences, University of Western Australia, Crawley, Western Australia, Australia

  http://orcid.org/0000-0002-6072-708X

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• Mark Pilkinton,

  Roles Methodology, Supervision

  Affiliation Division of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

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• Rita Smith,

  Roles Data curation, Project administration

  Affiliation Division of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

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• Louise Barnett,

  Roles Data curation

  Affiliation Division of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

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• Wyatt J. McDonnell,

  Roles Visualization, Writing – review & editing

  Current address: 10x Genomics, Pleasanton, California, United States of America

  Affiliation Division of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

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• Michaela Lucas,

  Roles Funding acquisition, Writing – review & editing

  Affiliation School of Medicine, University of Western Australia, Crawley, Western Australia, Australia

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• Francine Noel,

  Roles Data curation, Project administration

  Affiliation GHESKIO Centre, Port-au-prince, Haiti

  ⨯
• Simon Mallal,

  Roles Conceptualization, Resources

  Affiliations Institute for Immunology and Infectious Diseases, Murdoch University, Murdoch, Western Australia, Australia, Division of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

  http://orcid.org/0000-0002-7036-1309

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• Joseph A. Conrad,

  Roles Data curation, Investigation, Project administration

  Affiliation Department of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America

  http://orcid.org/0000-0001-8963-0460

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• Spyros A. Kalams ,

  Roles Conceptualization, Data curation, Funding acquisition, Methodology, Project administration, Supervision, Writing – review & editing

  ¶^‡ SK and SG also contributed equally to this work.

  Affiliation Division of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

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•  [ ... ],
• Silvana Gaudieri

  Roles Conceptualization, Data curation, Funding acquisition, Methodology, Supervision, Writing – review & editing

  * E-mail: silvana.gaudieri@uwa.edu.au

  ¶^‡ SK and SG also contributed equally to this work.

  Affiliations School of Human Sciences, University of Western Australia, Crawley, Western Australia, Australia, Institute for Immunology and Infectious Diseases, Murdoch University, Murdoch, Western Australia, Australia, Division of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

  http://orcid.org/0000-0001-6873-0198

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