Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci

• Taj Azarian ,

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: tazarian@hsph.harvard.edu

  Affiliation Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts, United States of America

  http://orcid.org/0000-0002-8611-5241

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• Patrick K. Mitchell,

  Roles Investigation

  Affiliation Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts, United States of America

  http://orcid.org/0000-0001-6848-0846

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• Maria Georgieva,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Writing – original draft

  Affiliation Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts, United States of America

  http://orcid.org/0000-0002-4553-7894

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• Claudette M. Thompson,

  Roles Data curation, Formal analysis, Investigation, Methodology

  Affiliation Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts, United States of America

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• Amel Ghouila,

  Roles Formal analysis

  Affiliation Institut Pasteur de Tunis, LR11IPT02, Laboratory of Transmission, Control and Immunobiology of Infections (LTCII), Tunis-Belvédère, Tunisia

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• Andrew J. Pollard,

  Roles Methodology, Writing – review & editing

  Affiliation Oxford Vaccine Group, Department of Paediatrics, University of Oxford; NIHR Oxford Biomedical Research Centre, Centre for Clinical Vaccinology and Tropical Medicine (CCVTM), Churchill Hospital, Oxford, United Kingdom

  http://orcid.org/0000-0001-7361-719X

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• Anne von Gottberg,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliation Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa

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• Mignon du Plessis,

  Roles Investigation, Writing – review & editing

  Affiliation Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa

  http://orcid.org/0000-0001-9186-0679

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• Martin Antonio,

  Roles Investigation, Methodology

  Affiliation Medical Research Council Unit The Gambia, Fajara, The Gambia

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• Brenda A. Kwambana-Adams,

  Roles Investigation, Writing – review & editing

  Affiliation Medical Research Council Unit The Gambia, Fajara, The Gambia

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• Stuart C. Clarke,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliations Faculty of Medicine and Institute for Life Sciences and Global Health Research Institute, University of Southampton, Southampton, United Kingdom, NIHR Southampton Biomedical Research Centre, Southampton General Hospital, Southampton, United Kingdom

  http://orcid.org/0000-0002-7009-1548

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• Dean Everett,

  Roles Investigation, Writing – review & editing

  Affiliation Queens Research Institute, University of Edinburgh, Edinburgh, United Kingdom

  ⨯
• Jennifer Cornick,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliation Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom

  ⨯
• Ewa Sadowy,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliation National Medicines Institute, Warsaw, Poland

  http://orcid.org/0000-0003-0284-6440

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• Waleria Hryniewicz,

  Roles Investigation, Writing – review & editing

  Affiliation National Medicines Institute, Warsaw, Poland

  http://orcid.org/0000-0002-3651-9790

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• Anna Skoczynska,

  Roles Investigation, Writing – original draft, Writing – review & editing

  Affiliation National Medicines Institute, Warsaw, Poland

  http://orcid.org/0000-0002-2247-830X

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• Jennifer C. Moïsi,

  Roles Investigation, Writing – review & editing

  Affiliation Pfizer Vaccines, Medical Development, Scientific and Clinical Affairs, Paris, France

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• Lesley McGee,

  Roles Investigation, Writing – review & editing

  Affiliation Respiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America

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• Bernard Beall,

  Roles Data curation, Formal analysis, Methodology, Writing – review & editing

  Affiliation Respiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America

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• Benjamin J. Metcalf,

  Roles Formal analysis, Investigation, Software, Writing – review & editing

  Affiliation Respiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America

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• Robert F. Breiman,

  Roles Investigation, Writing – review & editing

  Affiliation Global Health Institute, Emory University, Atlanta, Georgia, United States of America

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• PL Ho,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliation Department of Microbiology, Queen Mary Hospital University of Hong Kong, Hong Kong, People’s Republic of China

  http://orcid.org/0000-0002-8811-1308

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• Raymond Reid,

  Roles Investigation, Writing – review & editing

  Affiliation Center for American Indian Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, United States of America

  http://orcid.org/0000-0002-9839-6765

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• Katherine L. O’Brien,

  Roles Investigation, Resources, Writing – review & editing

  Affiliation Center for American Indian Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, United States of America

  http://orcid.org/0000-0002-0164-4030

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• Rebecca A. Gladstone,

  Roles Conceptualization, Investigation, Resources, Writing – review & editing

  Affiliation Wellcome Trust, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom

  http://orcid.org/0000-0002-7993-3051

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• Stephen D. Bentley,

  Roles Investigation, Resources, Software, Supervision, Writing – review & editing

  Affiliation Wellcome Trust, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom

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•  [ ... ],
• William P. Hanage

  Roles Conceptualization, Funding acquisition, Methodology, Project administration, Resources, Supervision, Validation, Writing – original draft, Writing – review & editing

  Affiliation Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts, United States of America

  http://orcid.org/0000-0002-6319-7336

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