Evolution of HIV-1 within untreated individuals and at the population scale in Uganda

• Jayna Raghwani ,

  Contributed equally to this work with: Jayna Raghwani, Andrew D. Redd

  Roles Formal analysis, Methodology, Writing – original draft, Writing – review & editing

  * E-mail: jayna.raghwani@bdi.ox.ac.uk (JR); aredd2@jhmi.edu (ADR); katrina.lythgoe@bdi.ox.ac.uk (KAL)

  Affiliations Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom, Department of Zoology, Peter Medawar Building, University of Oxford, Oxford, United Kingdom

  http://orcid.org/0000-0001-8538-4995

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• Andrew D. Redd ,

  Contributed equally to this work with: Jayna Raghwani, Andrew D. Redd

  Roles Conceptualization, Investigation, Writing – original draft, Writing – review & editing

  * E-mail: jayna.raghwani@bdi.ox.ac.uk (JR); aredd2@jhmi.edu (ADR); katrina.lythgoe@bdi.ox.ac.uk (KAL)

  Affiliations Laboratory of Immunoregulation, Division of Intramural Research, NIAID, NIH, Baltimore MD, United States of America, Department of Medicine, Johns Hopkins Medical Institute, Johns Hopkins University, Baltimore MD, United States of America

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• Andrew F. Longosz,

  Roles Investigation

  Affiliation Laboratory of Immunoregulation, Division of Intramural Research, NIAID, NIH, Baltimore MD, United States of America

  ⨯
• Chieh-Hsi Wu,

  Roles Methodology

  Affiliation Department of Statistics, University of Oxford, Oxford, United Kingdom

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• David Serwadda,

  Roles Project administration

  Affiliations Rakai Health Sciences Program, Kalisizo, Uganda, School of Public Health, Makerere University, Kampala, Uganda

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• Craig Martens,

  Roles Formal analysis

  Affiliation Genomics Unit, RTS, RTB, Rocky Mountain Laboratories, Division of Intramural Research, NIAID, NIH, Hamilton MT, United States of America

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• Joseph Kagaayi,

  Roles Project administration

  Affiliation Rakai Health Sciences Program, Kalisizo, Uganda

  ⨯
• Nelson Sewankambo,

  Roles Project administration

  Affiliations Rakai Health Sciences Program, Kalisizo, Uganda, School of Medicine, Makerere University, Kampala, Uganda

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• Stephen F. Porcella,

  Roles Formal analysis, Writing – review & editing

  Affiliation Genomics Unit, RTS, RTB, Rocky Mountain Laboratories, Division of Intramural Research, NIAID, NIH, Hamilton MT, United States of America

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• Mary K. Grabowski,

  Roles Data curation, Writing – review & editing

  Affiliation Department of Pathology, Johns Hopkins Medical Institute, Johns Hopkins University, Baltimore, MD, United States of America

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• Thomas C. Quinn,

  Roles Conceptualization, Funding acquisition, Writing – review & editing

  Affiliations Laboratory of Immunoregulation, Division of Intramural Research, NIAID, NIH, Baltimore MD, United States of America, Department of Medicine, Johns Hopkins Medical Institute, Johns Hopkins University, Baltimore MD, United States of America

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• Michael A. Eller,

  Roles Investigation, Writing – review & editing

  Affiliations U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, United States of America, Henry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, MD, United States of America

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• Leigh Anne Eller,

  Roles Investigation

  Affiliations U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, United States of America, Henry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, MD, United States of America

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• Fred Wabwire-Mangen,

  Roles Project administration

  Affiliations U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, United States of America, Henry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, MD, United States of America

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• Merlin L. Robb,

  Roles Methodology, Writing – review & editing

  Affiliations U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, MD, United States of America, Henry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, MD, United States of America

  http://orcid.org/0000-0003-3949-9649

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• Christophe Fraser,

  Roles Conceptualization, Funding acquisition, Writing – review & editing

  Affiliation Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom

  http://orcid.org/0000-0003-2399-9657

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•  [ ... ],
• Katrina A. Lythgoe

  Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: jayna.raghwani@bdi.ox.ac.uk (JR); aredd2@jhmi.edu (ADR); katrina.lythgoe@bdi.ox.ac.uk (KAL)

  Affiliations Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom, Department of Zoology, Peter Medawar Building, University of Oxford, Oxford, United Kingdom

  http://orcid.org/0000-0002-7089-7680

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