Estimating virus effective population size and selection without neutral markers

• Elsa Rousseau ,

  Contributed equally to this work with: Elsa Rousseau, Frédéric Fabre

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: elsa.rousseau7@gmail.com (ER); frederic.fabre@inra.fr (FF)

  Affiliations Université Côte d’Azur, Inria, INRA, CNRS, UPMC Univ Paris 06, Biocore team, Sophia Antipolis, France, Université Côte d’Azur, INRA, CNRS, ISA, Sophia Antipolis, France, Pathologie Végétale, INRA, 84140 Montfavet, France

  http://orcid.org/0000-0001-7013-6024

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• Benoît Moury,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Supervision, Writing – original draft, Writing – review & editing

  Affiliation Pathologie Végétale, INRA, 84140 Montfavet, France

  http://orcid.org/0000-0003-3081-1034

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• Ludovic Mailleret,

  Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Supervision, Writing – original draft

  Affiliations Université Côte d’Azur, Inria, INRA, CNRS, UPMC Univ Paris 06, Biocore team, Sophia Antipolis, France, Université Côte d’Azur, INRA, CNRS, ISA, Sophia Antipolis, France

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• Rachid Senoussi,

  Roles Conceptualization, Methodology, Writing – original draft

  Affiliation UR BioSp, INRA, Avignon, France

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• Alain Palloix †,

  † Deceased.

  Roles Conceptualization, Funding acquisition, Investigation, Methodology

  Affiliation UR GAFL, INRA, Montfavet, France

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• Vincent Simon,

  Roles Data curation, Investigation

  Affiliations Pathologie Végétale, INRA, 84140 Montfavet, France, UMR BFP, INRA, Villenave d’Ornon, France

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• Sophie Valière,

  Roles Data curation, Investigation

  Affiliations GeT-PlaGe, INRA, Genotoul, Castanet-tolosan, France, UAR DEPT GA, INRA, Castanet-Tolosan, France

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• Frédéric Grognard,

  Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Supervision, Writing – original draft

  Affiliation Université Côte d’Azur, Inria, INRA, CNRS, UPMC Univ Paris 06, Biocore team, Sophia Antipolis, France

  http://orcid.org/0000-0003-0805-775X

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• Frédéric Fabre

  Contributed equally to this work with: Elsa Rousseau, Frédéric Fabre

  Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Supervision, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: elsa.rousseau7@gmail.com (ER); frederic.fabre@inra.fr (FF)

  Affiliation UMR SAVE, INRA, Villenave d’Ornon, France

  http://orcid.org/0000-0001-8271-7678

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