HIV Evolution in Early Infection: Selection Pressures, Patterns of Insertion and Deletion, and the Impact of APOBEC

• Natasha Wood,

  Affiliations Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Observatory, Cape Town, South Africa, Centre for High-Performance Computing, CSIR Campus, Rosebank, Cape Town, South Africa

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• Tanmoy Bhattacharya,

  Affiliations Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America, Santa Fe Institute, Santa Fe, New Mexico, United States of America

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• Brandon F. Keele,

  Affiliation University of Alabama at Birmingham, Birmingham, Alabama, United States of America

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• Elena Giorgi,

  Affiliations Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America, Department of Mathematics and Statistics, University of Massachusetts, Amherst, Massachusetts, United States of America

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• Michael Liu,

  Affiliation Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford, United Kingdom

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• Brian Gaschen,

  Affiliation Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America

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• Marcus Daniels,

  Affiliation Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America

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• Guido Ferrari,

  Affiliation Duke University, Durham, North Carolina, United States of America

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• Barton F. Haynes,

  Affiliation Duke University, Durham, North Carolina, United States of America

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• Andrew McMichael,

  Affiliation Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford, United Kingdom

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• George M. Shaw,

  Affiliation University of Alabama at Birmingham, Birmingham, Alabama, United States of America

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• Beatrice H. Hahn,

  Affiliation University of Alabama at Birmingham, Birmingham, Alabama, United States of America

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• Bette Korber,

  Affiliations Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America, Santa Fe Institute, Santa Fe, New Mexico, United States of America

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• Cathal Seoighe

  * E-mail: cseoighe@gmail.com

  Affiliations Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Observatory, Cape Town, South Africa, Centre for High-Performance Computing, CSIR Campus, Rosebank, Cape Town, South Africa, School of Mathematics, Statistics and Applied Mathematics, National University of Ireland Galway, Galway, Ireland

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