About the Authors

Sophia David

Contributed equally to this work with: Sophia David, Joshua L. C. Wong

Roles Conceptualization, Data curation, Formal analysis, Investigation, Software, Visualization, Writing – original draft, Writing – review & editing

Affiliation Centre for Genomic Pathogen Surveillance, Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, United Kingdom

Joshua L. C. Wong

Contributed equally to this work with: Sophia David, Joshua L. C. Wong

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation MRC Centre for Molecular Bacteriology and Infection, Imperial College London, London, United Kingdom

Julia Sanchez-Garrido

Roles Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – review & editing

Affiliation MRC Centre for Molecular Bacteriology and Infection, Imperial College London, London, United Kingdom

Hok-Sau Kwong

Roles Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – review & editing

Affiliations Rutherford Appleton Laboratory, Research Complex at Harwell, Didcot, Oxfordshire, United Kingdom, Department of Life Sciences, Imperial College London; London, United Kingdom

Wen Wen Low

Roles Investigation, Validation, Writing – review & editing

Affiliation MRC Centre for Molecular Bacteriology and Infection, Imperial College London, London, United Kingdom

Fabio Morecchiato

Roles Formal analysis, Investigation, Validation, Writing – review & editing

Affiliation Department of Experimental and Clinical Medicine, University of Florence, Florence, Italy

Tommaso Giani

Roles Formal analysis, Investigation, Validation, Writing – review & editing

Affiliations Department of Experimental and Clinical Medicine, University of Florence, Florence, Italy, Clinical Microbiology and Virology Unit, Careggi University Hospital, Florence, Italy

Gian Maria Rossolini

Roles Supervision, Writing – review & editing

Affiliations Department of Experimental and Clinical Medicine, University of Florence, Florence, Italy, Clinical Microbiology and Virology Unit, Careggi University Hospital, Florence, Italy

Stephen J. Brett

Roles Supervision

Affiliation Department of Surgery and Cancer, Section of Anaesthetics, Pain Medicine and Intensive Care, Imperial College London, London, United Kingdom

Abigail Clements

Roles Supervision, Writing – review & editing

Affiliation MRC Centre for Molecular Bacteriology and Infection, Imperial College London, London, United Kingdom

Konstantinos Beis

Roles Funding acquisition, Supervision, Writing – review & editing

Affiliations Rutherford Appleton Laboratory, Research Complex at Harwell, Didcot, Oxfordshire, United Kingdom, Department of Life Sciences, Imperial College London; London, United Kingdom

David M. Aanensen

Roles Supervision, Writing – review & editing

Affiliation Centre for Genomic Pathogen Surveillance, Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, United Kingdom

Gad Frankel

Roles Conceptualization, Funding acquisition, Project administration, Supervision, Writing – original draft, Writing – review & editing

g.frankel@imperial.ac.uk

Affiliation MRC Centre for Molecular Bacteriology and Infection, Imperial College London, London, United Kingdom

Competing Interests

The authors have declared that no competing interests exist.