About the Authors

Jishnu Das

Roles Conceptualization, Formal analysis, Writing – original draft, Writing – review & editing

Current address: Center for Systems Immunology, Departments of Immunology and Computational & Systems Biology, University of Pittsburgh School of Medicine, Pittsurgh PA 15213, United States of America

Affiliations Ragon Institute of MGH, MIT and Harvard, Cambridge, United States of America, Department of Biological Engineering, MIT, Cambridge, United States of America

Anush Devadhasan

Roles Formal analysis, Project administration

Affiliation Ragon Institute of MGH, MIT and Harvard, Cambridge, United States of America

Caitlyn Linde

Roles Investigation

Affiliation Ragon Institute of MGH, MIT and Harvard, Cambridge, United States of America

Tom Broge

Roles Investigation

Affiliation Ragon Institute of MGH, MIT and Harvard, Cambridge, United States of America

Jessica Sassic

Roles Investigation

Affiliation Ragon Institute of MGH, MIT and Harvard, Cambridge, United States of America

Max Mangano

Roles Investigation

Affiliation Ragon Institute of MGH, MIT and Harvard, Cambridge, United States of America

Sean O'Keefe

Roles Investigation

Affiliation Ragon Institute of MGH, MIT and Harvard, Cambridge, United States of America

Todd Suscovich

Roles Investigation, Project administration

Affiliation Ragon Institute of MGH, MIT and Harvard, Cambridge, United States of America

Hendrik Streeck

Roles Resources

Affiliation Institute for HIV Research, Essen, Germany

Alivelu Irrinki

Roles Investigation

Affiliation Gilead Life Sciences, San Francisco, CA, United States of America

Chris Pohlmeyer

Roles Investigation

Affiliation Gilead Life Sciences, San Francisco, CA, United States of America

Gundula Min-Oo

Roles Investigation, Resources

Affiliation Gilead Life Sciences, San Francisco, CA, United States of America

Shu Lin

Roles Investigation

Affiliation Thayer School of Engineering, Dartmouth College, Hanover, United States of America

Joshua A. Weiner

Roles Investigation

Affiliation Thayer School of Engineering, Dartmouth College, Hanover, United States of America

Thomas Cihlar

Roles Resources

Affiliation Gilead Life Sciences, San Francisco, CA, United States of America

Margaret E. Ackerman

Roles Project administration, Resources

Affiliation Thayer School of Engineering, Dartmouth College, Hanover, United States of America

Boris Julg

Roles Project administration

Affiliation Ragon Institute of MGH, MIT and Harvard, Cambridge, United States of America

Steven Deeks

Roles Resources

Affiliation Department of Medicine, University of California San Francisco, San Francisco, United States of America

Douglas A. Lauffenburger

Roles Project administration, Supervision

Affiliation Department of Biological Engineering, MIT, Cambridge, United States of America

Galit Alter

Roles Conceptualization, Funding acquisition, Project administration, Supervision, Writing – original draft, Writing – review & editing

galter@mgh.harvard.edu

Affiliation Ragon Institute of MGH, MIT and Harvard, Cambridge, United States of America

Competing Interests

The authors affiliated with Gilead Sciences Inc are current employees of the company and may own company stock. This does not alter our adherence to all PLOS Pathogens policies on sharing data and materials.