About the Authors

Gaëlle Demarre

Contributed equally to this work with: Gaëlle Demarre, Victoria Prudent

Roles Conceptualization, Formal analysis, Investigation, Methodology

Affiliations CIRB–Collège de France, CNRS-UMR724, INSERM U1050, PSL Research University, Paris, France, Inovarion, Paris, France

Victoria Prudent

Contributed equally to this work with: Gaëlle Demarre, Victoria Prudent

Roles Conceptualization, Formal analysis, Investigation, Methodology

Affiliation CIRB–Collège de France, CNRS-UMR724, INSERM U1050, PSL Research University, Paris, France

Hanna Schenk

Roles Conceptualization, Formal analysis, Investigation, Methodology, Software, Writing – original draft, Writing – review & editing

Affiliations Department of Evolutionary Theory, Max Planck Institute for Evolutionary Biology, Plön, Germany, Institut de Biologie de l’Ecole Normale Supérieure, Département de Biologie, Ecole Normale Supérieure, CNRS, INSERM, PSL Research University, Paris, France

Emilie Rousseau

Roles Conceptualization, Investigation

Affiliation CIRB–Collège de France, CNRS-UMR724, INSERM U1050, PSL Research University, Paris, France

Marie-Agnès Bringer

Roles Formal analysis

Affiliations Centre des Sciences du Goût et de l'Alimentation, AgroSup Dijon, CNRS, INRA, Université Bourgogne Franche-Comté, Dijon, France, Microbes, Intestin, Inflammation et Susceptibilité de l'Hôte, UMR Inserm/Université Clermont Auvergne U1071, USC INRA 2018, Clermont Ferrand, France

Nicolas Barnich

Roles Resources, Writing – review & editing

Affiliation Microbes, Intestin, Inflammation et Susceptibilité de l'Hôte, UMR Inserm/Université Clermont Auvergne U1071, USC INRA 2018, Clermont Ferrand, France

Guy Tran Van Nhieu

Roles Funding acquisition, Resources, Writing – review & editing

Affiliation CIRB–Collège de France, CNRS-UMR724, INSERM U1050, PSL Research University, Paris, France

Sylvie Rimsky

Roles Formal analysis, Investigation

Affiliation CIRB–Collège de France, CNRS-UMR724, INSERM U1050, PSL Research University, Paris, France

Silvia De Monte

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Software, Supervision, Validation, Writing – original draft

Affiliations Department of Evolutionary Theory, Max Planck Institute for Evolutionary Biology, Plön, Germany, Institut de Biologie de l’Ecole Normale Supérieure, Département de Biologie, Ecole Normale Supérieure, CNRS, INSERM, PSL Research University, Paris, France

Olivier Espéli

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

olivier.espeli@college-de-france.fr

Affiliation CIRB–Collège de France, CNRS-UMR724, INSERM U1050, PSL Research University, Paris, France

Competing Interests

I have read the journal's policy and the authors of this manuscript have the following competing interests: Gaëlle Demarre was employed by Inovarion at the time of the study.