About the Authors

Violaine Dubois

Roles Conceptualization, Formal analysis, Methodology, Writing – original draft, Writing – review & editing

Affiliation Université Paris-Saclay, UVSQ, Inserm, Infection et inflammation, Montigny-Le-Bretonneux, France

Alexandre Pawlik

Roles Methodology, Visualization

Affiliation Institut Pasteur, Unité de Pathogénomique Mycobactérienne intégrée, UMR3525 CNRS, Paris, France

Anouchka Bories

Roles Methodology

Affiliation Université Paris-Saclay, UVSQ, Inserm, Infection et inflammation, Montigny-Le-Bretonneux, France

Vincent Le Moigne

Roles Methodology

Affiliation Université Paris-Saclay, UVSQ, Inserm, Infection et inflammation, Montigny-Le-Bretonneux, France

Odile Sismeiro

Roles Methodology

Affiliation Institut Pasteur—Bioinformatics and Biostatistics Hub—C3BI, USR 3756 IP CNRS, Paris, France

Rachel Legendre

Roles Data curation, Formal analysis, Software, Validation

Affiliations Institut Pasteur—Bioinformatics and Biostatistics Hub—C3BI, USR 3756 IP CNRS, Paris, France, Institut Pasteur—Transcriptome and Epigenome Platform—Biomics Pole—CITECH, Paris, France

Hugo Varet

Roles Data curation, Formal analysis, Software, Validation

Affiliations Institut Pasteur—Bioinformatics and Biostatistics Hub—C3BI, USR 3756 IP CNRS, Paris, France, Institut Pasteur—Transcriptome and Epigenome Platform—Biomics Pole—CITECH, Paris, France

María del Pilar Rodríguez-Ordóñez

Roles Formal analysis

Affiliation Laboratoire d'Écologie, Systématique et Évolution, Université Paris-Saclay, Orsay, France

Jean-Louis Gaillard

Roles Project administration

Affiliations Université Paris-Saclay, UVSQ, Inserm, Infection et inflammation, Montigny-Le-Bretonneux, France, AP-HP. GHU Paris Saclay, Hôpital Ambroise Paré, Boulogne Billancourt, France

Jean-Yves Coppée

Roles Project administration

Affiliation Institut Pasteur—Bioinformatics and Biostatistics Hub—C3BI, USR 3756 IP CNRS, Paris, France

Roland Brosch

Roles Conceptualization, Project administration, Writing – original draft, Writing – review & editing

Affiliation Institut Pasteur, Unité de Pathogénomique Mycobactérienne intégrée, UMR3525 CNRS, Paris, France

Jean-Louis Herrmann

Roles Conceptualization, Funding acquisition, Supervision, Validation, Writing – original draft, Writing – review & editing

jean-louis.herrmann@aphp.fr (J-LH); fabienne.misguich@uvsq.fr (FG-M)

Affiliations Université Paris-Saclay, UVSQ, Inserm, Infection et inflammation, Montigny-Le-Bretonneux, France, AP-HP. GHU Paris Saclay, Hôpital Raymond Poincaré, Garches, France

Fabienne Girard-Misguich

Roles Funding acquisition, Project administration, Supervision, Validation, Writing – original draft, Writing – review & editing

jean-louis.herrmann@aphp.fr (J-LH); fabienne.misguich@uvsq.fr (FG-M)

Affiliation Université Paris-Saclay, UVSQ, Inserm, Infection et inflammation, Montigny-Le-Bretonneux, France

Competing Interests

The authors have declared that no competing interests exist.