http://orcid.org/0000-0002-0245-1396
About the Authors
- Florian Douam
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Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing
Affiliations CIRI–International Center for Infectiology Research, Team EVIR, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, UMR5308, Ecole Normale Supérieure de Lyon, Univ Lyon, Lyon, France, CNRS UMR5557 Microbial ecology, Université Claude Bernard Lyon 1, INRA, UMR1418, Villeurbanne, France, Department of Molecular Biology, Princeton University, Princeton NJ, United States of America
- Floriane Fusil
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Contributed equally to this work with: Floriane Fusil, Margot Enguehard, Linda Dib, Francesca Nadalin, Loïc Schwaller
Roles Data curation, Investigation, Methodology
Affiliation CIRI–International Center for Infectiology Research, Team EVIR, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, UMR5308, Ecole Normale Supérieure de Lyon, Univ Lyon, Lyon, France
- Margot Enguehard
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Contributed equally to this work with: Floriane Fusil, Margot Enguehard, Linda Dib, Francesca Nadalin, Loïc Schwaller
Roles Data curation, Investigation, Methodology
Affiliations CNRS UMR5557 Microbial ecology, Université Claude Bernard Lyon 1, INRA, UMR1418, Villeurbanne, France, University of Lyon, Université Claude Bernard Lyon1, INRA, EPHE, IVPC, Viral Infections and Comparative Pathology, UMR754, Lyon, France, Institut Hospitalo-Universitaire, Pôle Hépato-digestif, Hôpitaux Universitaires de Strasbourg, Strasbourg, France
- Linda Dib
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Contributed equally to this work with: Floriane Fusil, Margot Enguehard, Linda Dib, Francesca Nadalin, Loïc Schwaller
Roles Data curation, Formal analysis, Investigation, Methodology, Software
Affiliation Molecular Phylogenetics and Speciation, Département d’écologie et évolution, Université de Lausanne, Lausanne, Suisse
- Francesca Nadalin
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Contributed equally to this work with: Floriane Fusil, Margot Enguehard, Linda Dib, Francesca Nadalin, Loïc Schwaller
Roles Data curation, Formal analysis, Investigation, Methodology, Software
Affiliation Sorbonne Université, CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative, Paris, France
- Loïc Schwaller
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Contributed equally to this work with: Floriane Fusil, Margot Enguehard, Linda Dib, Francesca Nadalin, Loïc Schwaller
Roles Data curation, Formal analysis, Investigation, Methodology
Affiliation Mathematical Institute, Leiden University, Leiden, The Netherlands
- Gabriela Hrebikova
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Roles Data curation, Formal analysis, Investigation, Methodology
Affiliation Department of Molecular Biology, Princeton University, Princeton NJ, United States of America
- Jimmy Mancip
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Roles Data curation, Formal analysis, Investigation, Methodology
Affiliation CIRI–International Center for Infectiology Research, Team EVIR, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, UMR5308, Ecole Normale Supérieure de Lyon, Univ Lyon, Lyon, France
- Laurent Mailly
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Roles Data curation, Formal analysis, Investigation, Methodology
Affiliations Inserm, U1110, Institut de Recherche sur les Maladies Virales et Hépatiques, Strasbourg, France, Université de Strasbourg, Strasbourg, France
- Roland Montserret
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Roles Data curation, Formal analysis, Investigation, Methodology
Affiliation Institut de Biologie et Chimie des Protéines, Bases Moléculaires et Structurales des Systèmes Infectieux, Labex Ecofect, UMR 5086 CNRS, Université de Lyon, Lyon, France
- Qiang Ding
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Roles Data curation, Formal analysis, Investigation, Methodology
Affiliation Department of Molecular Biology, Princeton University, Princeton NJ, United States of America
- Carine Maisse
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Roles Data curation, Formal analysis, Investigation, Methodology
Affiliation University of Lyon, Université Claude Bernard Lyon1, INRA, EPHE, IVPC, Viral Infections and Comparative Pathology, UMR754, Lyon, France
- Emilie Carlot
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Roles Data curation, Formal analysis, Investigation
Affiliation CAS Key Laboratory of Molecular Virology and Immunology, Unit of interspecies transmission of arboviruses and antivirals, Institut Pasteur of Shanghai, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
- Ke Xu
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Roles Data curation, Formal analysis, Investigation, Methodology
Affiliation CAS Key Laboratory of Molecular Virology and Immunology, Unit of interspecies transmission of arboviruses and antivirals, Institut Pasteur of Shanghai, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
- Els Verhoeyen
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Roles Data curation, Formal analysis, Investigation, Methodology
Affiliation CIRI–International Center for Infectiology Research, Team EVIR, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, UMR5308, Ecole Normale Supérieure de Lyon, Univ Lyon, Lyon, France
- Thomas F. Baumert
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Roles Formal analysis, Funding acquisition, Investigation, Supervision
Affiliations Institut Hospitalo-Universitaire, Pôle Hépato-digestif, Hôpitaux Universitaires de Strasbourg, Strasbourg, France, Inserm, U1110, Institut de Recherche sur les Maladies Virales et Hépatiques, Strasbourg, France, Université de Strasbourg, Strasbourg, France
- Alexander Ploss
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Roles Funding acquisition, Investigation, Supervision
Affiliation Department of Molecular Biology, Princeton University, Princeton NJ, United States of America
- Alessandra Carbone
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Roles Data curation, Funding acquisition, Investigation, Methodology, Software, Supervision, Writing – review & editing
* E-mail: flcosset@ens-lyon.fr (FLC); alessandra.carbone@lip6.fr (AC); dlaville@ips.ac.cn (DL)
¶‡ AC, FLC, and DL also contributed equally to this work.
Affiliations Sorbonne Université, CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative, Paris, France, Institut Universitaire de France, Paris, France
- François-Loïc Cosset
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Roles Funding acquisition, Investigation, Methodology, Supervision, Writing – review & editing
* E-mail: flcosset@ens-lyon.fr (FLC); alessandra.carbone@lip6.fr (AC); dlaville@ips.ac.cn (DL)
¶‡ AC, FLC, and DL also contributed equally to this work.
Affiliation CIRI–International Center for Infectiology Research, Team EVIR, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, UMR5308, Ecole Normale Supérieure de Lyon, Univ Lyon, Lyon, France
- Dimitri Lavillette
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Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Project administration, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing
* E-mail: flcosset@ens-lyon.fr (FLC); alessandra.carbone@lip6.fr (AC); dlaville@ips.ac.cn (DL)
¶‡ AC, FLC, and DL also contributed equally to this work.
Affiliations CIRI–International Center for Infectiology Research, Team EVIR, Inserm, U1111, Université Claude Bernard Lyon 1, CNRS, UMR5308, Ecole Normale Supérieure de Lyon, Univ Lyon, Lyon, France, CNRS UMR5557 Microbial ecology, Université Claude Bernard Lyon 1, INRA, UMR1418, Villeurbanne, France, University of Lyon, Université Claude Bernard Lyon1, INRA, EPHE, IVPC, Viral Infections and Comparative Pathology, UMR754, Lyon, France, CAS Key Laboratory of Molecular Virology and Immunology, Unit of interspecies transmission of arboviruses and antivirals, Institut Pasteur of Shanghai, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
Competing Interests
The authors declare no conflict of interest.