About the Authors

Denise Kühnert

Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

denise.kuehnert@gmail.com

Current address: Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, Zurich, Switzerland

Affiliations Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, Zurich, Switzerland, Institute of Medical Virology, University of Zurich, Zurich, Switzerland, Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland, Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland, Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland

Roger Kouyos

Roles Conceptualization, Funding acquisition, Investigation, Methodology, Writing – review & editing

Affiliations Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, Zurich, Switzerland, Institute of Medical Virology, University of Zurich, Zurich, Switzerland

George Shirreff

Roles Investigation, Methodology

Affiliations Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland, School of Medicine, Imperial College London, London, United Kingdom

Jūlija Pečerska

Roles Methodology, Writing – review & editing

Affiliations Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland, Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland

Alexandra U. Scherrer

Roles Data curation

Affiliations Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, Zurich, Switzerland, Institute of Medical Virology, University of Zurich, Zurich, Switzerland

Jürg Böni

Roles Data curation

Affiliation Institute of Medical Virology, University of Zurich, Zurich, Switzerland

Sabine Yerly

Roles Data curation

Affiliation Laboratory of Virology, Division of Infectious Diseases, Geneva University Hospital, Geneva, Switzerland

Thomas Klimkait

Roles Data curation

Affiliation Department of Biomedicine, University of Basel, Basel, Switzerland

Vincent Aubert

Roles Conceptualization

Affiliation Division of Immunology and Allergy, University Hospital Lausanne, Lausanne, Switzerland

Huldrych F. Günthard

Roles Conceptualization, Investigation, Supervision, Writing – review & editing

Affiliations Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, Zurich, Switzerland, Institute of Medical Virology, University of Zurich, Zurich, Switzerland

Tanja Stadler

Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Writing – review & editing

‡ These authors are joint senior authors who contributed equally to this work.

Affiliations Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland, Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland

Sebastian Bonhoeffer

Roles Conceptualization, Funding acquisition, Investigation, Project administration, Supervision, Writing – review & editing

‡ These authors are joint senior authors who contributed equally to this work.

Affiliation Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland

the Swiss HIV Cohort Study

Membership list can be found in the Acknowledgments section.

Competing Interests

The authors have declared that no competing interests exist.