About the Authors
- Pejman Mohammadi
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Contributed equally to this work with: Pejman Mohammadi, Julia di Iulio
Affiliations Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland, Swiss Institute of Bioinformatics, Basel and Lausanne, Switzerland
- Julia di Iulio
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Contributed equally to this work with: Pejman Mohammadi, Julia di Iulio
Affiliations Swiss Institute of Bioinformatics, Basel and Lausanne, Switzerland, Institute of Microbiology, Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland, School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
- Miguel Muñoz
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Affiliation Institute of Microbiology, Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland
- Raquel Martinez
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Affiliation Institute of Microbiology, Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland
- István Bartha
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Affiliations Swiss Institute of Bioinformatics, Basel and Lausanne, Switzerland, Institute of Microbiology, Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland, School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
- Matthias Cavassini
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Affiliation Service of Infectious Diseases, Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland
- Christian Thorball
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Affiliation Institute of Microbiology, Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland
- Jacques Fellay
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Affiliations Swiss Institute of Bioinformatics, Basel and Lausanne, Switzerland, Institute of Microbiology, Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland, School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland, Service of Infectious Diseases, Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland
- Niko Beerenwinkel
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* E-mail: niko.beerenwinkel@bsse.ethz.ch (NB); angela.ciuffi@chuv.ch (AC); amalio.telenti@chuv.ch (AT)
Affiliations Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland, Swiss Institute of Bioinformatics, Basel and Lausanne, Switzerland
- Angela Ciuffi
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* E-mail: niko.beerenwinkel@bsse.ethz.ch (NB); angela.ciuffi@chuv.ch (AC); amalio.telenti@chuv.ch (AT)
Affiliations Institute of Microbiology, Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland, University of Lausanne, Lausanne, Switzerland
- Amalio Telenti
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* E-mail: niko.beerenwinkel@bsse.ethz.ch (NB); angela.ciuffi@chuv.ch (AC); amalio.telenti@chuv.ch (AT)
Affiliations Institute of Microbiology, Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland, University of Lausanne, Lausanne, Switzerland
Competing Interests
The authors have declared that no competing interests exist.
Author Contributions
Conceived and designed the experiments: AT AC NB JF. Performed the experiments: MM CT AC RM. Analyzed the data: PM JdI. Wrote the paper: AT AC PM JdI NB JF. Clinical work: MC. Designed the web-based interactive analysis tool: IB.