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Transcriptome analysis

Gene expression alterations in testicular biopsies from males with spermatogenesis arrest identified by transcriptome analysis

Osamah Batiha, Esra’a Al-Zoubi, Rowida Almomani, Mohammad A. Al Smadi, Sura Alrawabdeh, Omar Alshokaibi, Hussam Abu-Farsakh, Abedalrhman Alkhateeb, Masood Abu-Halima

published 12 Sep 2025

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Transcriptome analysis of shade-induced growth and photosynthetic responses in soybean cultivars

Fengyi Zhang, Runnan Zhou, Rongqiang Yuan, Xiao Zhu, Xinyue Zhang, Sobhi F. Lamlom, Dai Shi, Ahmed M. Abdelghany, Jidao Du, Honglei Ren, Lijuan Qiu

published 10 Sep 2025

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An improved nuclei isolation protocol from leaf tissue for single-cell transcriptomics

Gabriela Madrid, Gabriel Angelo Saraiva Raimundo, Fabian Andres Reyes, Edgard Augusto de Toledo Picoli, Marcio F. R. Resende Jr., Kelly M. Balmant

published 10 Sep 2025

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Exploring the interplay between circadian rhythms and obesity: A Boolean network approach to understanding metabolic dysregulation

Meitner Cadena, George E. Barreto

published 09 Sep 2025

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STmiR: A Novel XGBoost-based framework for spatially resolved miRNA activity prediction in cancer transcriptomics

Jiaqi Yuan, Peng Xu, Zheng Ye, Wenbin Liu

published 09 Sep 2025

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Gene expression profiling and pathway analysis in acute myeloid leukaemia-normal karyotype patients

Angeli Ambayya, Rozaimi Razali, Sarina Sulong, Yee Yee Yap, Veena Selvaratnam, Jameela Sathar, Rosline Hassan

published 05 Sep 2025

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Integrated transcriptomic and metabolomic analysis of Jinggang honey pomelo yellow spot disease to reveal the disease resistance mechanism

Huimin Sun, Zexia Li, Yongfa Guo, Weiwei Li, Biling Jin, Ling Lu, Dingkun Liu, Li He, Shuaiwen Yin, Yang Wu

published 04 Sep 2025

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Transcriptome analysis reveals rootstock-driven effects on growth and photosynthesis in Camellia chekiangoleosa: A phenotypic and biochemical perspective

Zexin Chen, Linqing Cao, Chuansong Chen, Qiuping Zhong, Tieding He, Jinfeng Wang, Youcheng Zhou, Yuling Zou, Xiaoning Ge

published 03 Sep 2025

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Transcriptomic changes associated with infection of Nicotiana benthamiana plants with tomato ringspot virus (genus Nepovirus) during the acute symptomatic stage and after symptom recovery

Dinesh Babu Paudel, Ana Priscilla Montenegro Alonso, Joan Chisholm, Huogen Xiao, Hélène Sanfaçon

published 02 Sep 2025

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Deciphering the role of the lncRNA TRIBAL in hepatocyte models

Sébastien Soubeyrand, Paulina Lau, Ruth McPherson

published 02 Sep 2025

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Integrated DNA methylome and transcriptome analysis reveals the epigenetic regulatory mechanisms underlying maize response to copper stress

Lin Zhao, Mengyan Zhang, Qi Wu, Xi Wu, Zhenyu Yun

published 28 Aug 2025

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Whole-Genome sequencing of Chikungunya Virus (CHIKV) from Pakistan: Detection of the East/Central/South African (ECSA) genotype during the 2024 outbreak in Mansehra

Massab Umair, Muhammad Yasir, Zunera Jamal, Rabia Hakim, Syed Yawar Saeed, Muhammad Salman, Azhar Iqbal, Muhammad Qasim Khan, Faisal Khanzada, Yusra Javed

published 26 Aug 2025

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Diagnostic accuracy of circulating tumor DNA for detection of ALK rearrangement in lung cancer: A systematic review and meta-analysis of 14 studies

Jiantong Sun, Lan Yang, Dan Liu, Hui Xue, Panwen Tian, Lei Li

published 25 Aug 2025

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