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Transcriptome analysis

Flax rust infection transcriptomics reveals a transcriptional profile that may be indicative for rust Avr genes

Wenjie Wu, Adnane Nemri, Leila M. Blackman, Ann-Maree Catanzariti, Jana Sperschneider, Gregory J. Lawrence, Peter N. Dodds, David A. Jones, Adrienne R. Hardham

published 12 Dec 2019

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The genetic diversity and population structure of Sophora alopecuroides (Faboideae) as determined by microsatellite markers developed from transcriptome

Yuan Wang, Tingting Zhou, Daihan Li, Xuhui Zhang, Wanwen Yu, Jinfeng Cai, Guibin Wang, Qirong Guo, Xiaoming Yang, Fuliang Cao

published 05 Dec 2019

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SparkGA2: Production-quality memory-efficient Apache Spark based genome analysis framework

Hamid Mushtaq, Nauman Ahmed, Zaid Al-Ars

published 05 Dec 2019

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A Bayesian gene network reveals insight into the JAK-STAT pathway in systemic lupus erythematosus

Yupeng Li, Richard E. Higgs, Robert W. Hoffman, Ernst R. Dow, Xiong Liu, Michelle Petri, Daniel J. Wallace, Thomas Dörner, Brian J. Eastwood, Bradley B. Miller, Yushi Liu

published 02 Dec 2019

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HeLa-CCL2 cell heterogeneity studied by single-cell DNA and RNA sequencing

Wan-er Hu, Xin Zhang, Qiu-fang Guo, Jing-wei Yang, Yuan Yang, Shi-cheng Wei, Xiao-dong Su

published 02 Dec 2019

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Selection of optimal reference genes for qRT-PCR analysis of shoot development and graviresponse in prostrate and erect chrysanthemums

Xiaowei Li, Yujie Yang, Sagheer Ahmad, Ming Sun, Cunquan Yuan, Tangchun Zheng, Yu Han, Tangren Cheng, Jia Wang, Qixiang Zhang

published 27 Nov 2019

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Molecular characterization of lung adenocarcinoma from Korean patients using next generation sequencing

You Jin Chun, Jae Woo Choi, Min Hee Hong, Dongmin Jung, Hyeonju Son, Eun Kyung Cho, Young Joo Min, Sang-We Kim, Keunchil Park, Sung Sook Lee, Sangwoo Kim, Hye Ryun Kim, Byoung Chul Cho, Korean Lung Cancer Consortium (KLCC)

published 25 Nov 2019

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Clinical utility of combined preimplantation genetic testing methods in couples at risk of passing on beta thalassemia/hemoglobin E disease: A retrospective review from a single center

Chonthicha Satirapod, Matchuporn Sukprasert, Bhakbhoom Panthan, Angkana Charoenyingwattana, Pawares Chitayanan, Wasun Chantratita, Wicharn Choktanasiri, Objoon Trachoo, Suradej Hongeng

published 21 Nov 2019

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SSR marker development in Clerodendrum trichotomum using transcriptome sequencing

Gongwei Chen, Yuanzheng Yue, Yajie Hua, Die Hu, Tingting Shi, Zhaojing Chang, Xiulian Yang, Lianggui Wang

published 20 Nov 2019

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Next generation sequencing and RNA-seq characterization of adipose tissue in the Nile crocodile (Crocodylus niloticus) in South Africa: Possible mechanism(s) of pathogenesis and pathophysiology of pansteatitis

Odunayo I. Azeez, Jan G. Myburgh, Ana-Mari Bosman, Jonathan Featherston, Kgomotso P. Sibeko-Matjilla, Marinda C. Oosthuizen, Joseph P. Chamunorwa

published 18 Nov 2019

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Ion torrent high throughput mitochondrial genome sequencing (HTMGS)

N. R. Harvey, C. L. Albury, S. Stuart, M. C. Benton, D. A. Eccles, J. R. Connell, H. G. Sutherland, R. J. N. Allcock, R. A. Lea, L. M. Haupt, L. R. Griffiths

published 15 Nov 2019

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Mineral absorption is an enriched pathway in a brain region of restless legs syndrome patients with reduced MEIS1 expression

Faezeh Sarayloo, Alexandre Dionne-Laporte, Helene Catoire, Daniel Rochefort, Gabrielle Houle, Jay P. Ross, Fulya Akçimen, Rachel De Barros Oliveira, Gustavo Turecki, Patrick A. Dion, Guy A. Rouleau

published 14 Nov 2019

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LFastqC: A lossless non-reference-based FASTQ compressor

Sultan Al Yami, Chun-Hsi Huang

published 14 Nov 2019

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