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Transcriptome analysis

The digestive system in Zygentoma as an insect model for high cellulase activity

Ratnasri Pothula, Derek Shirley, O. P. Perera, William E. Klingeman, Cris Oppert, Heba M. Y. Abdelgaffar, Brian R. Johnson, Juan Luis Jurat-Fuentes

published 28 Feb 2019

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Integrated routine workflow using next-generation sequencing and a fully-automated platform for the detection of KRAS, NRAS and BRAF mutations in formalin-fixed paraffin embedded samples with poor DNA quality in patients with colorectal carcinoma

Claire Franczak, Ludovic Dubouis, Pauline Gilson, Marie Husson, Marie Rouyer, Jessica Demange, Agnès Leroux, Jean-Louis Merlin, Alexandre Harlé

published 27 Feb 2019

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Provir/Latitude 45 study: A step towards a multi-epitopic CTL vaccine designed on archived HIV-1 DNA and according to dominant HLA I alleles

Camille Tumiotto, Bruna M. Alves, Patricia Recordon-Pinson, Marine Jourdain, Pantxika Bellecave, Gwenda-Line Guidicelli, Jonathan Visentin, Fabrice Bonnet, Mojdan Hessamfar, Didier Neau, Jorge Sanchez, Christian Brander, Mohammad Sajadi, Lindsay Eyzaguirre, Esmeralda A. Soares, Jean-Pierre Routy, Marcelo A. Soares, Hervé Fleury

published 27 Feb 2019

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Isolating pulmonary microvascular endothelial cells ex vivo: Implications for pulmonary arterial hypertension, and a caution on the use of commercial biomaterials

Bradley M. Wertheim, Yi-Dong Lin, Ying-Yi Zhang, Andriy O. Samokhin, George A. Alba, Elena Arons, Paul B. Yu, Bradley A. Maron

published 27 Feb 2019

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Molecular characterization of Histomonas meleagridis exoproteome with emphasis on protease secretion and parasite-bacteria interaction

Rounik Mazumdar, Katharina Nöbauer, Karin Hummel, Michael Hess, Ivana Bilic

published 26 Feb 2019

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Comparative analysis of the transcriptome of the Amazonian fish species Colossoma macropomum (tambaqui) and hybrid tambacu by next generation sequencing

Fátima Gomes, Luciana Watanabe, João Vianez, Márcio Nunes, Jedson Cardoso, Clayton Lima, Horacio Schneider, Iracilda Sampaio

published 25 Feb 2019

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Extraction-free whole transcriptome gene expression analysis of FFPE sections and histology-directed subareas of tissue

Christy L. Trejo, Miloš Babić, Elliot Imler, Migdalia Gonzalez, Sergei I. Bibikov, Peter J. Shepard, Harper C. VanSteenhouse, Joanne M. Yeakley, Bruce E. Seligmann

published 22 Feb 2019

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Comparative transcriptomic analysis reveals genes regulating the germination of morphophysiologically dormant Paris polyphylla seeds during a warm stratification

Dengqun Liao, Juan Zhu, Menghuan Zhang, Xian’en Li, Peng Sun, Jianhe Wei, Jianjun Qi

published 21 Feb 2019

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The responses of lungs and adjacent lymph nodes in responding to Yersinia pestis infection: A transcriptomic study using a non-human primate model

Nabarun Chakraborty, Aarti Gautam, Seid Muhie, Stacy-Ann Miller, Candace Moyler, Marti Jett, Rasha Hammamieh

published 21 Feb 2019

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Viral infection detection using metagenomics technology in six poultry farms of eastern China

Yuan Qiu, Suchun Wang, Baoxu Huang, Huanxiang Zhong, Zihao Pan, Qingye Zhuang, Cheng Peng, Guangyu Hou, Kaicheng Wang

published 20 Feb 2019

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Presence, persistence and effects of pre-treatment HIV-1 drug resistance variants detected using next generation sequencing: A Retrospective longitudinal study from rural coastal Kenya

Amin S. Hassan, David F. Bibby, Shalton M. Mwaringa, Clara A. Agutu, Kennedy K. Ndirangu, Eduard J. Sanders, Patricia A. Cane, Jean L. Mbisa, James A. Berkley

published 13 Feb 2019

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Testing of library preparation methods for transcriptome sequencing of real life glioblastoma and brain tissue specimens: A comparative study with special focus on long non-coding RNAs

Marek Vecera, Jiri Sana, Jan Oppelt, Boris Tichy, Kopkova Alena, Radim Lipina, Martin Smrcka, Radim Jancalek, Marketa Hermanova, Leos Kren, Ondrej Slaby

published 11 Feb 2019

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Comparative analysis reveals a role for TGF-β in shaping the residency-related transcriptional signature in tissue-resident memory CD8⁺ T cells

Artika P. Nath, Asolina Braun, Scott C. Ritchie, Francis R. Carbone, Laura K. Mackay, Thomas Gebhardt, Michael Inouye

published 11 Feb 2019

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