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Transcriptome analysis

Systems biology analysis of publicly available transcriptomic data reveals a critical link between AKR1B10 gene expression, smoking and occurrence of lung cancer

Juan M. Cubillos-Angulo, Eduardo R. Fukutani, Luís A. B. Cruz, María B. Arriaga, João Victor Lima, Bruno B. Andrade, Artur T. L. Queiroz, Kiyoshi F. Fukutani

published 25 Feb 2020

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Testis transcriptome profiling identified genes involved in spermatogenic arrest of cattleyak

Shixin Wu, TserangDonko Mipam, Chuanfei Xu, Wangsheng Zhao, Mujahid Ali Shah, Chuanping Yi, Hui Luo, Xin Cai, Jincheng Zhong

published 24 Feb 2020

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The stochastic nature of errors in next-generation sequencing of circulating cell-free DNA

David A. Nix, Sabine Hellwig, Christopher Conley, Alun Thomas, Carrie L. Fuertes, Cindy L. Hamil, Preetida J. Bhetariya, Ignacio Garrido-Laguna, Gabor T. Marth, Mary P. Bronner, Hunter R. Underhill

published 21 Feb 2020

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Iron metabolic pathways in the processes of sponge plasticity

Alexander D. Finoshin, Kim I. Adameyko, Kirill V. Mikhailov, Oksana I. Kravchuk, Anton A. Georgiev, Nicolay G. Gornostaev, Igor A. Kosevich, Victor S. Mikhailov, Guzel R. Gazizova, Elena I. Shagimardanova, Oleg A. Gusev, Yulia V. Lyupina

published 21 Feb 2020

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Transcriptome analysis of hepatopancreas of Eriocheir sinensis with hepatopancreatic necrosis disease (HPND)

Zongying Yang, Kun Hu, Yujie Hou, Yulan Wang, Yi Yao, Xiaoqing Lei, Baohua Yan, Qinglong Jiang, Chunxian Xiong, Liangqing Xu, Liugen Zeng

published 21 Feb 2020

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Systems biology approach identifies functional modules and regulatory hubs related to secondary metabolites accumulation after transition from autotrophic to heterotrophic growth condition in microalgae

Bahman Panahi, Mohammad Farhadian, Mohammad Amin Hejazi

published 21 Feb 2020

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Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak

Marjolein J. Poen, Anne Pohlmann, Clara Amid, Theo M. Bestebroer, Sharon M. Brookes, Ian H. Brown, Helen Everett, Claudia M. E. Schapendonk, Rachel D. Scheuer, Saskia L. Smits, Martin Beer, Ron A. M. Fouchier, Richard J. Ellis

published 20 Feb 2020

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De novo transcriptome analysis of halotolerant bacterium Staphylococcus sp. strain P-TSB-70 isolated from East coast of India: In search of salt stress tolerant genes

Priyanka Das, Bijay Kumar Behera, Soumendranath Chatterjee, Basanta Kumar Das, Trilochan Mohapatra

published 10 Feb 2020

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Exposure to the Florida red tide dinoflagellate, Karenia brevis, and its associated brevetoxins induces ecophysiological and proteomic alterations in Porites astreoides

David A. Reynolds, Mi-Jeong Yoo, Danielle L. Dixson, Cliff Ross

published 07 Feb 2020

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Complementary transcriptome and proteome profiling in the mature seeds of Camellia oleifera from Hainan Island

Zhouchen Ye, Yougen Wu, Zeeshan Ul Haq Muhammad, Wuping Yan, Jing Yu, Junfeng Zhang, Guanglong Yao, Xinwen Hu

published 06 Feb 2020

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Comparative transcriptome provides molecular insight into defense-associated mechanisms against spider mite in resistant and susceptible common bean cultivars

Abdul Hadi Hoseinzadeh, Aboozar Soorni, Marie Shoorooei, Masoud Torkzadeh Mahani, Reza Maali Amiri, Hossein Allahyari, Rahmat Mohammadi

published 04 Feb 2020

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Selection of reference genes for tissue/organ samples of adults of Eucryptorrhynchus scrobiculatus

Peng Gao, Jingzhen Wang, Junbao Wen

published 03 Feb 2020

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Development of SSR markers in Paeonia based on De Novo transcriptomic assemblies

Dan He, Jiaorui Zhang, Xuefeng Zhang, Songlin He, Dongbo Xie, Yang Liu, Chaomei Li, Zheng Wang, Yiping Liu

published 30 Jan 2020

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