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Transcriptome analysis

Deterministic and Stochastic Allele Specific Gene Expression in Single Mouse Blastomeres

Fuchou Tang, Catalin Barbacioru, [ ... ], M. Azim Surani

Particulate Matter from Both Heavy Fuel Oil and Diesel Fuel Shipping Emissions Show Strong Biological Effects on Human Lung Cells at Realistic and Comparable In Vitro Exposure Conditions

Sebastian Oeder, Tamara Kanashova, [ ... ], Ralf Zimmermann

High-Throughput SuperSAGE for Digital Gene Expression Analysis of Multiple Samples Using Next Generation Sequencing

Hideo Matsumura, Kentaro Yoshida, [ ... ], Ryohei Terauchi

VennPainter: A Tool for the Comparison and Identification of Candidate Genes Based on Venn Diagrams

Guoliang Lin, Jing Chai, [ ... ], Jing Luo

Evaluation of Digital PCR for Absolute RNA Quantification

Rebecca Sanders, Deborah J. Mason, Carole A. Foy, Jim F. Huggett

Variant analysis pipeline for accurate detection of genomic variants from transcriptome sequencing data

Modupeore O. Adetunji, Susan J. Lamont, Behnam Abasht, Carl J. Schmidt

Normalizing RNA-Sequencing Data by Modeling Hidden Covariates with Prior Knowledge

Sara Mostafavi, Alexis Battle, [ ... ], Daphne Koller

Comparison of Sequence Reads Obtained from Three Next-Generation Sequencing Platforms

Shingo Suzuki, Naoaki Ono, [ ... ], Tetsuya Yomo

How Many Genes Are Expressed in a Transcriptome? Estimation and Results for RNA-Seq

Luis Fernando García-Ortega, Octavio Martínez

Variation in RNA-Seq Transcriptome Profiles of Peripheral Whole Blood from Healthy Individuals with and without Globin Depletion

Heesun Shin, Casey P. Shannon, [ ... ], for the PROOF Centre of Excellence Team

Generation of Artificial FASTQ Files to Evaluate the Performance of Next-Generation Sequencing Pipelines

Matthew Frampton, Richard Houlston

A Conserved MicroRNA Regulatory Circuit Is Differentially Controlled during Limb/Appendage Regeneration

Benjamin L. King, Viravuth P. Yin

NMD Classifier: A reliable and systematic classification tool for nonsense-mediated decay events

Min-Kung Hsu, Hsuan-Yu Lin, Feng-Chi Chen

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