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Transcriptome analysis

Development of SSR markers related to salinity resistance based on transcriptomic sequences in Medicago sativa

Rugang Yu, Xin Chen, Hui Zhang, Qiting Zhang, Xinyi Chen, Yanqiu Dong, Liwei Chen, Daniel Basigalup, Guoliang Wang, Xueling Du

published 14 Nov 2025

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ReadSeeker: A DNABERT based de-novo read-level gene predictor

Ben Wulf, Piotr Wojciech Dabrowski

published 13 Nov 2025

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Multi-omics analysis reveals metabolic regulation of phosphatidylcholine, triglycerides, phosphatidylethanolamine, and cardiolipin metabolism in mouse liver with metabolic dysfunction-associated steatotic liver disease

Hong Liang, Kang Song

published 07 Nov 2025

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A joint complex network and machine learning approach for the identification of discriminative gene communities in autistic brain

Antonio Lacalamita, Ester Pantaleo, Alfonso Monaco, Loredana Bellantuono, Alessandro Fania, Marianna La Rocca, Tommaso Maggipinto, Sabina Tangaro, Nicola Amoroso, Roberto Bellotti

published 05 Nov 2025

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Harnessing genetic diversity: The genomic and transcriptomic insights of Eugenia uniflora for environmental resilience

Isabel Cristina Cadavid Sánchez, Edgar L. Waschburger, Rita M.C. de Almeida, Alexandre Nascimento de Vargas, Guilherme Loss de Morais, Jimena Giraldo Flores, Dámaris Esquén Bayona, Rogerio Margis, Andreia Carina Turchetto-Zolet, Frank Lino Guzman Escudero

published 04 Nov 2025

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DNA/RNA hybrid profiling in autistic patients: A focus on mRNA and non-coding RNA variations

Leila Kianmehr, Kasra MokhtarZadeh, Zeynep Yilmaz, Hadi Darzi Ramandi, Ecmel Mehmetbeyoglu Duman, Elif Funda Sener, Serpil Taheri, Minoo Rassoulzadegan

published 03 Nov 2025

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Multiplets in scRNA-seq data: Extent of the problem and efficacy of methods for removal

Dimitris Ttoouli, Daniel Hoffmann

published 30 Oct 2025

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The combination of zalfermin and semaglutide has additive therapeutic effects in a diet-induced obese and biopsy-confirmed mouse model of MASH

Jenny Norlin, Maria Dermit, Nikos Sidiropoulos, Elisabeth D. Galsgaard, Henrik H. Hansen, Michael Feigh, Sanne S. Veidal, Markus Latta, Emma Henriksson, Birgitte Andersen

published 28 Oct 2025

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Sequencing and analysis of 131 SARS-CoV-2 isolates in previously sampled and unsampled regions of Jordan from 2020 to 2023

Rame Khasawneh, Andrew W. Bartlow, Shirin Almharat, Abdullah Almuhasen, Ali Alhuniti, Lena Hajaya, Al Anood Al Habashneh, Osama Alshudefat, Mohammad Dojan, Abdelghani Tbakhi, Zeena Shaheen, Eiad Atwa, Colin PS Kruse, Osama Alsmadi, Samuel I. Koehler

published 27 Oct 2025

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Germinal center trajectories and transcriptional signatures define CLL subtypes and their pathway regulators

Ahmed Mohamed, Luca Giudice, José Basílio, Sabina Barresi, Pradeep Kumar Kopparapu, Vanda Friman, Marco Tartaglia, Tarja Malm, Andreas Tilevik, Ola Grimsholm

published 22 Oct 2025

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High throughput transcriptomics analysis of ovine mammary epithelial cells stimulated with Staphylococcus aureus in vitro

Saif Adil Abbood Al-Janabi, Ghulam Asghar Sajid, Sidra Zeb, Muhammad Jasim Uddin, Mehmet Ulas Cinar

published 30 Sep 2025

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Multi-omics analysis of parthanatos related molecular subgroup and prognostic model development in stomach adenocarcinoma

Xiangxin Wu, Lianming Cai, Yanping Liu, Bowen Wang, Tianyi Xia, Zhenhua Liu

published 26 Sep 2025

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Transcriptome differentiation in Cryptomeria japonica trees with different origins growing in the north and south of Japan

Tokuko Ujino-Ihara, Kentaro Uchiyama, Seiichi Kanetani, Yoshihisa Suyama, Yoshihiko Tsumura

published 26 Sep 2025

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