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Transcriptome analysis

Deciphering the role of the lncRNA TRIBAL in hepatocyte models

Sébastien Soubeyrand, Paulina Lau, Ruth McPherson

published 02 Sep 2025

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Integrated DNA methylome and transcriptome analysis reveals the epigenetic regulatory mechanisms underlying maize response to copper stress

Lin Zhao, Mengyan Zhang, Qi Wu, Xi Wu, Zhenyu Yun

published 28 Aug 2025

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Whole-Genome sequencing of Chikungunya Virus (CHIKV) from Pakistan: Detection of the East/Central/South African (ECSA) genotype during the 2024 outbreak in Mansehra

Massab Umair, Muhammad Yasir, Zunera Jamal, Rabia Hakim, Syed Yawar Saeed, Muhammad Salman, Azhar Iqbal, Muhammad Qasim Khan, Faisal Khanzada, Yusra Javed

published 26 Aug 2025

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Diagnostic accuracy of circulating tumor DNA for detection of ALK rearrangement in lung cancer: A systematic review and meta-analysis of 14 studies

Jiantong Sun, Lan Yang, Dan Liu, Hui Xue, Panwen Tian, Lei Li

published 25 Aug 2025

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Transcriptome sequencing reveals the evolutionary histories and gene expression evolution in two related Pagurus species

Zakea Sultana, Isaac Adeyemi Babarinde, Masafumi Nozawa, Kazuho Ikeo, Akira Asakura, Tomoyuki Nakano

published 20 Aug 2025

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SpaVGN: A hybrid deep learning framework for high-resolution spatial transcriptomics data reconstruction and spatial domain identification

Haiyan Wang, Yanping Zhang, Yangyang Zhang, Xuening Zhao, Zijia Bai, Xuejing Ma, Chunguang Zhao

published 14 Aug 2025

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Transcriptome profiling and weighted gene co-expression network analysis reveal changes of hub genes and molecular pathways in rat lungs following deep hypothermic circulatory arrest

Lei Wang, Qingtong Wu, Yuzuo Lin, Ziyan Lin, Guodong Zhong, Liangwan Chen

published 14 Aug 2025

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Mechanism of Astragaloside-Brucea javanica oil nanoemulsion against oral squamous cell carcinoma through CDK1/MTFR2: Network pharmacology, bioinformatics, and experimental studies

Yihan Lai, Runqiang Liu, Huajie Shao, Juan Zhan, Yujie Ma, Lanfei Zhou, Zhichao Wan, Sicheng Li, Wei Wang, Lin Jiang, Yisen Shao

published 01 Aug 2025

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Antimicrobial activity of Origanum vulgare L. essential oil and its effects on fungal gene expression

Yan Li, Lu He, Zhiwei Xue, Yu Liang, Jiaying Jiang, Yiyan Wei, Huisi Li, Huimin He, Rongjun Li

published 01 Aug 2025

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Analysis of metabolomics and transcriptomics data to assess interactions in microalgal co-culture of Skeletonema marinoi and Prymnesium parvum

Mahnoor Zulfiqar, Anne-Susann Abel, Emanuel Barth, Kristy Syhapanha, Remington Xavier Poulin, Sassrika Nethmini Costa Warnakulasuriya Dehiwalage, Georg Pohnert, Christoph Steinbeck, Kristian Peters, Maria Sorokina

published 28 Jul 2025

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An autoencoder learning method for predicting breast cancer subtypes

Zahra Rostami, Kavitha Mukund, Maryam Masnadi-Shirazi, Shankar Subramaniam

published 23 Jul 2025

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Quiescence modulates age-related changes in the functional capacity of highly proliferative canine lung mesenchymal stromal cell populations

Nakesha Agyapong, Leslie Dominguez-Ortega, Brian Macdonough, Patrick Mulluso, Sagar Patel, Briti Prajapati, Brian Saville, Andrew Shapiro, Ethan Trim, Kara Battaglia, Jocelyn Herrera, Gianna Garifo-MacPartland, Dianne Newcomb, Latoya Okundaye, Heather Paglia, Julia Paxson

published 23 Jul 2025

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Skin transcriptomics of invasive Coqui frogs: stress responses, parasite signatures, and antimicrobial peptides

Randy Ortiz, Leeann C. Dabydeen, Carolyn Kosinski, Priyanka Gera, Juan D. Carvajal-Castro, Victoria Akilov, Hunter J. Howell, Emily Powell, Juan C. Santos

published 17 Jul 2025

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