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Transcriptome analysis

Transcriptome profiling of laser-captured crown root primordia reveals new pathways activated during early stages of crown root formation in rice

Jérémy Lavarenne, Mathieu Gonin, Antony Champion, Marie Javelle, Hélène Adam, Jacques Rouster, Geneviève Conejéro, Marc Lartaud, Jean-Luc Verdeil, Laurent Laplaze, Christophe Sallaud, Mikael Lucas, Pascal Gantet

published 19 Nov 2020

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Variation in intrinsic resistance of pea aphids to parasitoid wasps: A transcriptomic basis

Ailsa H. C. McLean, Benjamin J. Parker

published 18 Nov 2020

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Histological, immunohistochemical and transcriptomic characterization of human tracheoesophageal fistulas

Erwin Brosens, Janine F. Felix, Anne Boerema-de Munck, Elisabeth M. de Jong, Elisabeth M. Lodder, Sigrid Swagemakers, Marjon Buscop-van Kempen, Ronald R. de Krijger, Rene M. H. Wijnen, Wilfred F. J. van IJcken, Peter van der Spek, Annelies de Klein, Dick Tibboel, Robbert J. Rottier

published 17 Nov 2020

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Transcriptome profile of carbon catabolite repression in an efficient l-(+)-lactic acid-producing bacterium Enterococcus mundtii QU25 grown in media with combinations of cellobiose, xylose, and glucose

Yuh Shiwa, Haruko Fujiwara, Mao Numaguchi, Mohamed Ali Abdel-Rahman, Keisuke Nabeta, Yu Kanesaki, Yukihiro Tashiro, Takeshi Zendo, Naoto Tanaka, Nobuyuki Fujita, Hirofumi Yoshikawa, Kenji Sonomoto, Mariko Shimizu-Kadota

published 17 Nov 2020

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Divergent organ-specific isogenic metastatic cell lines identified using multi-omics exhibit differential drug sensitivity

Paul T. Winnard Jr, Farhad Vesuna, Sankar Muthukumar, Venu Raman

published 16 Nov 2020

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Blood group typing from whole-genome sequencing data

Julien Paganini, Peter L. Nagy, Nicholas Rouse, Philippe Gouret, Jacques Chiaroni, Chistophe Picard, Julie Di Cristofaro

published 12 Nov 2020

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Lymphoplasmacytic lymphoma associated with diffuse large B-cell lymphoma: Progression or divergent evolution?

Macarena Boiza-Sánchez, Rebeca Manso, Olga Balagué, Cristina Chamizo, Elham Askari, Rocío Nieves Salgado, Carlos Blas-López, Elena Aguirregoicoa-García, Javier Menárguez, Carlos Santonja, Magdalena Adrados, Miguel Ángel Limeres-González, Miguel Ángel Piris, Socorro María Rodríguez-Pinilla

published 12 Nov 2020

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Whole blood transcriptome biomarkers of unruptured intracranial aneurysm

Kerry E. Poppenberg, Lu Li, Muhammad Waqas, Nikhil Paliwal, Kaiyu Jiang, James N. Jarvis, Yijun Sun, Kenneth V. Snyder, Elad I. Levy, Adnan H. Siddiqui, John Kolega, Hui Meng, Vincent M. Tutino

published 06 Nov 2020

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Comprehensive analysis of differential expression profiles via transcriptome sequencing in SH-SY5Y cells infected with CV-A16

Yajie Hu, Zhen Yang, Shenglan Wang, Danxiong Sun, Mingmei Zhong, Mudong Wen, Jie Song, Yunhui Zhang

published 06 Nov 2020

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A machine learning-based treatment prediction model using whole genome variants of hepatitis C virus

Hiroaki Haga, Hidenori Sato, Ayumi Koseki, Takafumi Saito, Kazuo Okumoto, Kyoko Hoshikawa, Tomohiro Katsumi, Kei Mizuno, Taketo Nishina, Yoshiyuki Ueno

published 05 Nov 2020

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RNase H-dependent PCR enables highly specific amplification of antibody variable domains from single B-cells

John Crissman, Yuhao Lin, Kevin Separa, Madeleine Duquette, Michael Cohen, Candyd Velasquez, Thomas Cujec

published 05 Nov 2020

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Single-cell analysis of transcriptome and DNA methylome in human oocyte maturation

Bo Yu, Naresh Doni Jayavelu, Stephanie L. Battle, Jessica C. Mar, Timothy Schimmel, Jacques Cohen, R. David Hawkins

published 05 Nov 2020

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Differential gene expression analysis and cytological evidence reveal a sexual stage of an amoeba with multiparental cellular and nuclear fusion

Yonas I. Tekle, Fang Wang, Alireza Heidari, Alanna Johnson Stewart

published 04 Nov 2020

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