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Transcriptome analysis

A model for isoform-level differential expression analysis using RNA-seq data without pre-specifying isoform structure

Yang Liu, Junying Wang, Song Wu, Jie Yang

published 16 May 2022

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Consensus molecular subtype differences linking colon adenocarcinoma and obesity revealed by a cohort transcriptomic analysis

Michael W. Greene, Peter T. Abraham, Peyton C. Kuhlers, Elizabeth A. Lipke, Martin J. Heslin, Stanley T. Wijaya, Ifeoluwa Odeniyi

published 13 May 2022

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A protocol for recruiting and analyzing the disease-oriented Russian disc degeneration study (RuDDS) biobank for functional omics studies of lumbar disc degeneration

Olga N. Leonova, Elizaveta E. Elgaeva, Tatiana S. Golubeva, Alexey V. Peleganchuk, Aleksandr V. Krutko, Yurii S. Aulchenko, Yakov A. Tsepilov

published 13 May 2022

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Transcriptome profiling of subepithelial PDGFRα cells in colonic mucosa reveals several cell-selective markers

Se Eun Ha, Byungchang Jin, Brian G. Jorgensen, Hannah Zogg, Lai Wei, Rajan Singh, Chanjae Park, Masaaki Kurahashi, Sei Kim, Gain Baek, Sandra M. Poudrier, Moon Young Lee, Kenton M. Sanders, Seungil Ro

published 13 May 2022

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Metabolic and transcriptome analysis of dark red taproot in radish (Raphanus sativus L.)

Shuangping Heng, Changbin Gao, Mengdi Cui, Jing Fu, Sujing Ren, Kaiyun Xin, Congan He, Aihua Wang, Liping Song, Liguang Tang, Bincai Wang, Xueli Zhang

published 10 May 2022

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Constitutive gene expression differs in three brain regions important for cognition in neophobic and non-neophobic house sparrows (Passer domesticus)

Christine R. Lattin, Tosha R. Kelly, Morgan W. Kelly, Kevin M. Johnson

published 10 May 2022

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A sheet pocket to prevent cross-contamination of formalin-fixed paraffin-embedded block for application in next generation sequencing

Keiichi Iwaya, Hisae Arai, Nanao Takatou, Yuka Morita, Rinko Ozeki, Hirofumi Nakaoka, Masaru Sakamoto, Tsutomu Kouno, Masayoshi Soma

published 04 May 2022

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Mycobacterium tuberculosis infection, immune activation, and risk of HIV acquisition

Rachel A. Bender Ignacio, Jessica Long, Aparajita Saha, Felicia K. Nguyen, Lara Joudeh, Ethan Valinetz, Simon C. Mendelsohn, Thomas J. Scriba, Mark Hatherill, Holly Janes, Gavin Churchyard, Susan Buchbinder, Ann Duerr, Javeed A. Shah, Thomas R. Hawn

published 03 May 2022

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Whole genome sequencing of SARS-CoV2 strains circulating in Iran during five waves of pandemic

Jila Yavarian, Ahmad Nejati, Vahid Salimi, Nazanin Zahra Shafiei Jandaghi, Kaveh Sadeghi, Adel Abedi, Ali Sharifi Zarchi, Mohammad Mehdi Gouya, Talat Mokhtari-Azad

published 02 May 2022

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Transcriptomic analysis of chloride tolerance in Leptospirillum ferriphilum DSM 14647 adapted to NaCl

Javier Rivera-Araya, Thomas Heine, Renato Chávez, Michael Schlömann, Gloria Levicán

published 29 Apr 2022

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Comparative transcriptome profiling of high and low oil yielding Santalum album L

Tanzeem Fatima, Rangachari Krishnan, Ashutosh Srivastava, Vageeshbabu S. Hanur, M. Srinivasa Rao

published 28 Apr 2022

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Development and evaluation of ActSeq: A targeted next-generation sequencing panel for clinical oncology use

Zonggao Shi, Jacqueline Lopez, William Kalliney, Bobbie Sutton, Joyce Simpson, Kevin Maggert, Sheng Liu, Jun Wan, M. Sharon Stack

published 21 Apr 2022

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Impact of medication on blood transcriptome reveals off-target regulations of beta-blockers

Michael Rode, Kolja Nenoff, Kerstin Wirkner, Katrin Horn, Andrej Teren, Ralf Regenthal, Markus Loeffler, Joachim Thiery, Achim Aigner, Janne Pott, Holger Kirsten, Markus Scholz

published 21 Apr 2022

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