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Transcriptome analysis

Harnessing genetic diversity: The genomic and transcriptomic insights of Eugenia uniflora for environmental resilience

Isabel Cristina Cadavid Sánchez, Edgar L. Waschburger, Rita M.C. de Almeida, Alexandre Nascimento de Vargas, Guilherme Loss de Morais, Jimena Giraldo Flores, Dámaris Esquén Bayona, Rogerio Margis, Andreia Carina Turchetto-Zolet, Frank Lino Guzman Escudero

published 04 Nov 2025

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DNA/RNA hybrid profiling in autistic patients: A focus on mRNA and non-coding RNA variations

Leila Kianmehr, Kasra MokhtarZadeh, Zeynep Yilmaz, Hadi Darzi Ramandi, Ecmel Mehmetbeyoglu Duman, Elif Funda Sener, Serpil Taheri, Minoo Rassoulzadegan

published 03 Nov 2025

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Multiplets in scRNA-seq data: Extent of the problem and efficacy of methods for removal

Dimitris Ttoouli, Daniel Hoffmann

published 30 Oct 2025

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The combination of zalfermin and semaglutide has additive therapeutic effects in a diet-induced obese and biopsy-confirmed mouse model of MASH

Jenny Norlin, Maria Dermit, Nikos Sidiropoulos, Elisabeth D. Galsgaard, Henrik H. Hansen, Michael Feigh, Sanne S. Veidal, Markus Latta, Emma Henriksson, Birgitte Andersen

published 28 Oct 2025

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Sequencing and analysis of 131 SARS-CoV-2 isolates in previously sampled and unsampled regions of Jordan from 2020 to 2023

Rame Khasawneh, Andrew W. Bartlow, Shirin Almharat, Abdullah Almuhasen, Ali Alhuniti, Lena Hajaya, Al Anood Al Habashneh, Osama Alshudefat, Mohammad Dojan, Abdelghani Tbakhi, Zeena Shaheen, Eiad Atwa, Colin PS Kruse, Osama Alsmadi, Samuel I. Koehler

published 27 Oct 2025

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Germinal center trajectories and transcriptional signatures define CLL subtypes and their pathway regulators

Ahmed Mohamed, Luca Giudice, José Basílio, Sabina Barresi, Pradeep Kumar Kopparapu, Vanda Friman, Marco Tartaglia, Tarja Malm, Andreas Tilevik, Ola Grimsholm

published 22 Oct 2025

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High throughput transcriptomics analysis of ovine mammary epithelial cells stimulated with Staphylococcus aureus in vitro

Saif Adil Abbood Al-Janabi, Ghulam Asghar Sajid, Sidra Zeb, Muhammad Jasim Uddin, Mehmet Ulas Cinar

published 30 Sep 2025

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Multi-omics analysis of parthanatos related molecular subgroup and prognostic model development in stomach adenocarcinoma

Xiangxin Wu, Lianming Cai, Yanping Liu, Bowen Wang, Tianyi Xia, Zhenhua Liu

published 26 Sep 2025

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Transcriptome differentiation in Cryptomeria japonica trees with different origins growing in the north and south of Japan

Tokuko Ujino-Ihara, Kentaro Uchiyama, Seiichi Kanetani, Yoshihisa Suyama, Yoshihiko Tsumura

published 26 Sep 2025

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Distinct transcriptomic effects of intermittent and chronic caloric restriction in mammary fat pad of a breast cancer mouse model

Bilge Guvenc Tuna, Nazim Arda Keles, Munevver Burcu Cicekdal, Soner Dogan, Sulev Koks

published 23 Sep 2025

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Microsatellite development for Theridion evexum (Araneae: Theridiidae) using low-coverage genome sequencing and the MiMi script

Ruth Madrigal-Brenes, Gilbert Barrantes, Luis Sandoval, Eric J. Fuchs

published 15 Sep 2025

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Gene expression alterations in testicular biopsies from males with spermatogenesis arrest identified by transcriptome analysis

Osamah Batiha, Esra’a Al-Zoubi, Rowida Almomani, Mohammad A. Al Smadi, Sura Alrawabdeh, Omar Alshokaibi, Hussam Abu-Farsakh, Abedalrhman Alkhateeb, Masood Abu-Halima

published 12 Sep 2025

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Transcriptome analysis of shade-induced growth and photosynthetic responses in soybean cultivars

Fengyi Zhang, Runnan Zhou, Rongqiang Yuan, Xiao Zhu, Xinyue Zhang, Sobhi F. Lamlom, Dai Shi, Ahmed M. Abdelghany, Jidao Du, Honglei Ren, Lijuan Qiu

published 10 Sep 2025

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