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Transcriptome analysis

The shared biomarkers and molecular mechanisms of systemic lupus erythematosus and type 2 diabetes

Dawei Yang, Youqi Zhang, Liu Ji, Jianjun Wu, Fan Yang

published 22 Jan 2026

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Cell death-related gene signatures as dual-function biomarkers: Early diagnosis and therapeutic targeting in Staphylococcus aureus pneumonia

Cao Qing, Wanjuan Sun, Chaomian Yang, Yien Yao, Qiong Liang, Tianxia Huang, Lu Lin

published 20 Jan 2026

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Integrative pan-resistome and transcriptomic characterization reveals differential gene expression signatures in carbapenem-resistant Acinetobacter baumannii: Insights into efflux pump regulation and therapeutic targeting strategies

Mohanraj Gopikrishnan, George Priya Doss C

published 16 Jan 2026

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Comprehensive transcriptome and metabolome analysis to exploration the effects of TCs on GCs lipid metabolism at goose pre-ovulatory follicle

Jisi Ma, Wenqiang Sun, Xin Yuan, Hongyu Long, Hui Shen, Chunying Liu, Xiang Gan

published 09 Jan 2026

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GelInsight: Open-source software for large-sample DNA fragmentation quality control in gel electrophoresis images

Kathlyne Jayne B. Bautista, Marjan Mehrab-Mohseni, Sultan A. Kiradoh, Paul A. Dayton, Samantha G. Pattenden

published 07 Jan 2026

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Manual curation for improved genome annotation of the functionally extinct northern white rhinoceros (Ceratotherium simum cottoni)

Elena Ruggeri, Julien Prunier, Marc-André Sirard, Barbara Durrant, Kristin Klohonatz

published 05 Jan 2026

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Cold plasma-induced transcriptomic reprogramming and alternative splicing in tomato plants infected with ToBRFV

Mahsa Rostami, Abozar Ghorbani, Davoud Koolivand, Abolfazl Mazandarani

published 05 Jan 2026

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A non-invasive urinary diagnostic signature for diabetic kidney disease revealed by machine learning and single-cell analysis

Yonggang Chen, Jintai Luo, Yingying Zheng, Xiaomei Jiang, Zixiang Yang, Xiaobing Liu

published 02 Jan 2026

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Evaluation of RNA extraction and rRNA depletion protocols for RNA-Seq in eleven edible seaweed species from brown, red, and green algae

Rob J. Dekker, Wim A. Ensink, Marina F. van Olst, Selina M. van Leeuwen, Wim C. de Leeuw, Martijs J. Jonker, Timo M. Breit

published 02 Jan 2026

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Next-Gen intestinal parasite detection: Leveraging metataxonomics for improved diagnosis of intestinal protists and helminths

Katherine Bedoya-Urrego, Nicolas Rozo-Montoya, Ana L. Galván-Díaz, Gisela M. Garcia-Montoya, Juan F. Alzate

published 02 Jan 2026

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Integrated transcriptome and metabolome analysis of melanin-related genes and metabolites in Muchuan Black Bones Chickens

Liu Wei, Jie Hong-Wei, Gao Ming-Chao, Yao Xiu-Mei, Yin Qiong, Xiang Hai, Ma Zheng, Zhang Zheng-Fen, Li Liang, Li Hua, Qi Hao, Ye Fei

published 30 Dec 2025

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Single-cell RNA-seq data normalization: A benchmarking study

Qinyu Ge, Yuqi Sheng, Junru Lu, Yuwei Yang, Min Pan

published 18 Dec 2025

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Co-regulation of microglial subgroups in Alzheimer’s amyloid pathology: Implications for diagnosis and drug development

Yu Zhou, Yukuan Huang, Yangchang Fan, Feng Xue

published 05 Dec 2025

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