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Transcriptome analysis

Helicase-like transcription factor (HLTF)-deleted CDX/TME model of colorectal cancer increased transcription of oxidative phosphorylation genes and diverted glycolysis to boost S-glutathionylation in lymphatic intravascular metastatic niches

Dalia Martinez-Marin, Rebecca A. Helmer, Gurvinder Kaur, Rachel L. Washburn, Raul Martinez-Zaguilan, Souad R. Sennone, Jannette M. Dufour, Beverly S. Chilton

published 08 Sep 2023

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Maternal metabolic status and in-vitro culture conditions during embryonic genome activation deregulate the expression of energy-related genes in the bovine 16-cells embryo

Maria B. Rabaglino, Niamh Forde, Urban Besenfelder, Vitezslav Havlicek, Helmut Blum, Alexander Graf, Eckhard Wolf, Patrick Lonergan

published 25 Aug 2023

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Hypothesis-generating analysis of the impact of non-damaging metabolic acidosis on the transcriptome of different cell types: Integrated stress response (ISR) modulation as general transcriptomic reaction to non-respiratory acidic stress?

Virginie Dubourg, Marie-Christin Schulz, Philipp Terpe, Stefanie Ruhs, Michael Kopf, Michael Gekle

published 25 Aug 2023

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Helicase-like transcription factor (Hltf)-deletion activates Hmgb1-Rage axis and granzyme A-mediated killing of pancreatic β cells resulting in neonatal lethality

Gurvinder Kaur, Rebecca A. Helmer, Dalia Martinez-Marin, Souad R. Sennoune, Rachel L. Washburn, Raul Martinez-Zaguilan, Jannette M. Dufour, Beverly S. Chilton

published 25 Aug 2023

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Transcriptomic analysis of Amaranthus retroflex resistant to PPO-inhibitory herbicides

Yulian Guo, Yu Wang, Xiangyun Zang, Chan Luo, Chunyan Huang, Keqiang Cong, Xiaotong Guo

published 24 Aug 2023

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Regulation of transcriptome networks that mediate ginsenoside biosynthesis by essential ecological factors

Zhongce Wang, Zhiguo Chen, You Tang, Meiping Zhang, Meng Huang

published 17 Aug 2023

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Global expression pattern of genes containing positively selected sites in European anchovy (Engraulis encrasicolus L.) may shed light on teleost reproduction

Vahap Eldem, Gökmen Zararsız, Melike Erkan

published 11 Aug 2023

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Transcriptomic analysis of biofilm formation in strains of Clostridioides difficile associated with recurrent and non-recurrent infection reveals potential candidate markers for recurrence

Daira Rubio-Mendoza, Carlos Córdova-Fletes, Adrián Martínez-Meléndez, Rayo Morfín-Otero, Héctor Jesús Maldonado-Garza, Elvira Garza-González

published 03 Aug 2023

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Evaluation of an optimized germline exomes pipeline using BWA-MEM2 and Dragen-GATK tools

Nofe Alganmi, Heba Abusamra

published 03 Aug 2023

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High throughput isolation of RNA from single-cells within an intact tissue for spatial and temporal sequencing a reality

John Stanley, Akshar Lohith, Lucca Debiaso, Kevan Wang, Minh Ton, Wenwu Cui, Weiwei Gu, Aihua Fu, Nader Pourmand

published 01 Aug 2023

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An image-guided microfluidic system for single-cell lineage tracking

Mahmut Aslan Kamil, Camille Fourneaux, Alperen Yilmaz, Stavrakis Stavros, Romuald Parmentier, Andras Paldi, Sandrine Gonin-Giraud, Andrew J. deMello, Olivier Gandrillon

published 01 Aug 2023

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Integrated bioinformatics and statistical approach to identify the common molecular mechanisms of obesity that are linked to the development of two psychiatric disorders: Schizophrenia and major depressive disorder

Md Khairul Islam, Md Rakibul Islam, Md Habibur Rahman, Md Zahidul Islam, Md Mehedi Hasan, Md Mainul Islam Mamun, Mohammad Ali Moni

published 26 Jul 2023

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Development of EST-SSRs based on the transcriptome of Castanopsis carlesii and cross-species transferability in other Castanopsis species

Xiaoru Zhong, Mengyang Xu, Ting Li, Rongxi Sun

published 20 Jul 2023

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