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Transcriptome analysis

selSeq: A method for the enrichment of non-polyadenylated RNAs including enhancer and long non-coding RNAs for sequencing

Jason D. Limberis, Alina Nalyvayko, Joel D. Ernst, John Z. Metcalfe

published 28 Nov 2023

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Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection

Nikoletta Katsaouni, Pablo Llavona, Yascha Khodamoradi, Ann-Kathrin Otto, Stephanie Körber, Christof Geisen, Christian Seidl, Maria J. G. T. Vehreschild, Sandra Ciesek, Jörg Ackermann, Ina Koch, Marcel H. Schulz, Daniela S. Krause

published 16 Nov 2023

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Exploring multisite heterogeneity of human basal cell carcinoma proteome and transcriptome

Ariel Berl, Ofir Shir-az, Ilai Genish, Hadas Biran, Din Mann, Amrita Singh, Julia Wise, Vladimir Kravtsov, Debora Kidron, Alexander Golberg, Edward Vitkin, Zohar Yakhini, Avshalom Shalom

published 10 Nov 2023

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Improved meta-analysis pipeline ameliorates distinctive gene regulators of diabetic vasculopathy in human endothelial cell (hECs) RNA-Seq data

Diksha Pandey, Onkara Perumal P.

published 09 Nov 2023

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Differential gene expression between viruliferous and non-viruliferous Schizaphis graminum (Rondani)

Yan M. Crane, Charles F. Crane, Brandon J. Schemerhorn

published 08 Nov 2023

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Colonic mucosal associated invariant T cells in Crohn’s disease have a diverse and non-public T cell receptor beta chain repertoire

Andrew J. Konecny, Donna M. Shows, James D. Lord

published 03 Nov 2023

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De novo assembly of Iron-Heart Cunninghamia lanceolata transcriptome and EST-SSR marker development for genetic diversity analysis

Sen Liu, Gongxiu He, Gongliang Xie, Yamei Gong, Ninghua Zhu, Can Xiao

published 02 Nov 2023

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Levodopa-induced dyskinesia in early-onset Parkinson’s disease (EOPD) associates with glucocerebrosidase mutation: A next-generation sequencing study in EOPD patients in Thailand

Sekh Thanprasertsuk, Prasit Phowthongkum, Thitipong Hopetrungraung, Chalalai Poorirerngpoom, Tikumphorn Sathirapatya, Patsorn Wichit, Onanong Phokaewvarangkul, Kornkiat Vongpaisarnsin, Saknan Bongsebandhu-phubhakdi, Roongroj Bhidayasiri

published 31 Oct 2023

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RNA-seq RNAaccess identified as the preferred method for gene expression analysis of low quality FFPE samples

Kai Song, Emon Elboudwarej, Xi Zhao, Luting Zhuo, David Pan, Jinfeng Liu, Carrie Brachmann, Scott D. Patterson, Oh Kyu Yoon, Marianna Zavodovskaya

published 26 Oct 2023

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Transcriptomic data exploring the effect of agave fructans on the induction of the defense system in avocado fruit

Esther Angélica Cuéllar-Torres, Selene Aguilera-Aguirre, Ulises Miguel López-García, Miguel Ángel Hernández-Oñate, Efigenia Montalvo-González, Rosa Isela Ortiz-Basurto, Julio Vega-Arreguín, Alejandra Chacón-López

published 26 Oct 2023

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An invasive appetite: Combining molecular and stable isotope analyses to reveal the diet of introduced house mice (Mus musculus) on a small, subtropical island

Wieteke A. Holthuijzen, Elizabeth N. Flint, Stefan J. Green, Jonathan H. Plissner, Daniel Simberloff, Dagmar Sweeney, Coral A. Wolf, Holly P. Jones

published 19 Oct 2023

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On the use of QDE-SVM for gene feature selection and cell type classification from scRNA-seq data

Grace Yee Lin Ng, Shing Chiang Tan, Chia Sui Ong

published 19 Oct 2023

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Loss of heme oxygenase 2 causes reduced expression of genes in cardiac muscle development and contractility and leads to cardiomyopathy in mice

Rengul Cetin-Atalay, Angelo Y. Meliton, Cevher Ozcan, Parker S. Woods, Kaitlyn A. Sun, Yun Fang, Robert B. Hamanaka, Gökhan M. Mutlu

published 16 Oct 2023

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