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Transcriptome analysis

A Dual Platform Approach to Transcript Discovery for the Planarian Schmidtea Mediterranea to Establish RNAseq for Stem Cell and Regeneration Biology

Martin J. Blythe, Damian Kao, Sunir Malla, Joanna Rowsell, Ray Wilson, Deborah Evans, Jamie Jowett, Amy Hall, Virginie Lemay, Sabrina Lam, A. Aziz Aboobaker

published 14 Dec 2010

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Design, Validation and Annotation of Transcriptome-Wide Oligonucleotide Probes for the Oligochaete Annelid Eisenia fetida

Ping Gong, Mehdi Pirooznia, Xin Guan, Edward J. Perkins

published 08 Dec 2010

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Transcriptome Analysis of the Brown Planthopper Nilaparvata lugens

Jian Xue, Yan-Yuan Bao, Bao-ling Li, Yan-Bing Cheng, Zhi-Yu Peng, Hang Liu, Hai-Jun Xu, Zeng-Rong Zhu, Yong-Gen Lou, Jia-An Cheng, Chuan-Xi Zhang

published 06 Dec 2010

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De Novo Transcriptome Sequencing in Anopheles funestus Using Illumina RNA-Seq Technology

Jacob E. Crawford, Wamdaogo M. Guelbeogo, Antoine Sanou, Alphonse Traoré, Kenneth D. Vernick, N'Fale Sagnon, Brian P. Lazzaro

published 02 Dec 2010

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Characterization of the Small RNA Transcriptomes of Androgen Dependent and Independent Prostate Cancer Cell Line by Deep Sequencing

Gang Xu, Jinyu Wu, LingLin Zhou, Binghua Chen, Zhongsheng Sun, Fangqing Zhao, Zhihua Tao

published 30 Nov 2010

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Efficient Double Fragmentation ChIP-seq Provides Nucleotide Resolution Protein-DNA Binding Profiles

Michal Mokry, Pantelis Hatzis, Ewart de Bruijn, Jan Koster, Rogier Versteeg, Jurian Schuijers, Marc van de Wetering, Victor Guryev, Hans Clevers, Edwin Cuppen

published 30 Nov 2010

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The LARGE Principle of Cellular Reprogramming: Lost, Acquired and Retained Gene Expression in Foreskin and Amniotic Fluid-Derived Human iPS Cells

Katharina Wolfrum, Ying Wang, Alessandro Prigione, Karl Sperling, Hans Lehrach, James Adjaye

published 29 Oct 2010

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Tissue-Specific Transcriptomics of the Exotic Invasive Insect Pest Emerald Ash Borer (Agrilus planipennis)

Omprakash Mittapalli, Xiaodong Bai, Praveen Mamidala, Swapna Priya Rajarapu, Pierluigi Bonello, Daniel A. Herms

published 28 Oct 2010

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Whole Blood Transcriptomics in Cardiac Surgery Identifies a Gene Regulatory Network Connecting Ischemia Reperfusion with Systemic Inflammation

Orfeas Liangos, Sophie Domhan, Christian Schwager, Martin Zeier, Peter E. Huber, Francesco Addabbo, Michael S. Goligorsky, Lynn Hlatky, Bertrand L. Jaber, Amir Abdollahi

published 27 Oct 2010

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Development of a Low Bias Method for Characterizing Viral Populations Using Next Generation Sequencing Technology

Stephanie M. Willerth, Hélder A. M. Pedro, Lior Pachter, Laurent M. Humeau, Adam P. Arkin, David V. Schaffer

published 22 Oct 2010

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Intertwining Threshold Settings, Biological Data and Database Knowledge to Optimize the Selection of Differentially Expressed Genes from Microarray

Paul Chuchana, Philippe Holzmuller, Frederic Vezilier, David Berthier, Isabelle Chantal, Dany Severac, Jean Loup Lemesre, Gerard Cuny, Philippe Nirdé, Bruno Bucheton

published 20 Oct 2010

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A Brassica Exon Array for Whole-Transcript Gene Expression Profiling

Christopher G. Love, Neil S. Graham, Seosamh Ó Lochlainn, Helen C. Bowen, Sean T. May, Philip J. White, Martin R. Broadley, John P. Hammond, Graham J. King

published 16 Sep 2010

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Transcriptional Reprogramming in Nonhuman Primate (Rhesus Macaque) Tuberculosis Granulomas

Smriti Mehra, Bapi Pahar, Noton K. Dutta, Cecily N. Conerly, Kathrine Philippi-Falkenstein, Xavier Alvarez, Deepak Kaushal

published 31 Aug 2010

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