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Transcriptome analysis

Efficient Double Fragmentation ChIP-seq Provides Nucleotide Resolution Protein-DNA Binding Profiles

Michal Mokry, Pantelis Hatzis, Ewart de Bruijn, Jan Koster, Rogier Versteeg, Jurian Schuijers, Marc van de Wetering, Victor Guryev, Hans Clevers, Edwin Cuppen

published 30 Nov 2010

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The LARGE Principle of Cellular Reprogramming: Lost, Acquired and Retained Gene Expression in Foreskin and Amniotic Fluid-Derived Human iPS Cells

Katharina Wolfrum, Ying Wang, Alessandro Prigione, Karl Sperling, Hans Lehrach, James Adjaye

published 29 Oct 2010

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Tissue-Specific Transcriptomics of the Exotic Invasive Insect Pest Emerald Ash Borer (Agrilus planipennis)

Omprakash Mittapalli, Xiaodong Bai, Praveen Mamidala, Swapna Priya Rajarapu, Pierluigi Bonello, Daniel A. Herms

published 28 Oct 2010

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Whole Blood Transcriptomics in Cardiac Surgery Identifies a Gene Regulatory Network Connecting Ischemia Reperfusion with Systemic Inflammation

Orfeas Liangos, Sophie Domhan, Christian Schwager, Martin Zeier, Peter E. Huber, Francesco Addabbo, Michael S. Goligorsky, Lynn Hlatky, Bertrand L. Jaber, Amir Abdollahi

published 27 Oct 2010

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Development of a Low Bias Method for Characterizing Viral Populations Using Next Generation Sequencing Technology

Stephanie M. Willerth, Hélder A. M. Pedro, Lior Pachter, Laurent M. Humeau, Adam P. Arkin, David V. Schaffer

published 22 Oct 2010

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Intertwining Threshold Settings, Biological Data and Database Knowledge to Optimize the Selection of Differentially Expressed Genes from Microarray

Paul Chuchana, Philippe Holzmuller, Frederic Vezilier, David Berthier, Isabelle Chantal, Dany Severac, Jean Loup Lemesre, Gerard Cuny, Philippe Nirdé, Bruno Bucheton

published 20 Oct 2010

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A Brassica Exon Array for Whole-Transcript Gene Expression Profiling

Christopher G. Love, Neil S. Graham, Seosamh Ó Lochlainn, Helen C. Bowen, Sean T. May, Philip J. White, Martin R. Broadley, John P. Hammond, Graham J. King

published 16 Sep 2010

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Transcriptional Reprogramming in Nonhuman Primate (Rhesus Macaque) Tuberculosis Granulomas

Smriti Mehra, Bapi Pahar, Noton K. Dutta, Cecily N. Conerly, Kathrine Philippi-Falkenstein, Xavier Alvarez, Deepak Kaushal

published 31 Aug 2010

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Identifying Molecular Effects of Diet through Systems Biology: Influence of Herring Diet on Sterol Metabolism and Protein Turnover in Mice

Intawat Nookaew, Britt G. Gabrielsson, Agneta Holmäng, Ann-Sofie Sandberg, Jens Nielsen

published 24 Aug 2010

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Growth Performance and Root Transcriptome Remodeling of Arabidopsis in Response to Mars-Like Levels of Magnesium Sulfate

Anne M. Visscher, Anna-Lisa Paul, Matias Kirst, Charles L. Guy, Andrew C. Schuerger, Robert J. Ferl

published 23 Aug 2010

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Rapid Dopaminergic Modulation of the Fish Hypothalamic Transcriptome and Proteome

Jason T. Popesku, Christopher J. Martyniuk, Nancy D. Denslow, Vance L. Trudeau

published 20 Aug 2010

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Mitochondrial DNA Variant Discovery and Evaluation in Human Cardiomyopathies through Next-Generation Sequencing

Michael V. Zaragoza, Joseph Fass, Marta Diegoli, Dawei Lin, Eloisa Arbustini

published 20 Aug 2010

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Identifying Modules of Coexpressed Transcript Units and Their Organization of Saccharopolyspora erythraea from Time Series Gene Expression Profiles

Xiao Chang, Shuai Liu, Yong-Tao Yu, Yi-Xue Li, Yuan-Yuan Li

published 12 Aug 2010

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