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Transcriptome analysis

Regional Regulation of Transcription in the Bovine Genome

Arun Kommadath, Haisheng Nie, [ ... ], Mari A. Smits

Dual Organism Transcriptomics of Airway Epithelial Cells Interacting with Conidia of Aspergillus fumigatus

Jean L. Oosthuizen, Pol Gomez, [ ... ], Scott J. Tebbutt

Evaluating the Fidelity of De Novo Short Read Metagenomic Assembly Using Simulated Data

Miguel Pignatelli, Andrés Moya

Discovery of Nuclear-Encoded Genes for the Neurotoxin Saxitoxin in Dinoflagellates

Anke Stüken, Russell J. S. Orr, [ ... ], Kjetill S. Jakobsen

Comparative Transcriptome Analysis of Bacillus subtilis Responding to Dissolved Oxygen in Adenosine Fermentation

Wen-Bang Yu, Shu-Hong Gao, [ ... ], Bang-Ce Ye

Comparison of Sequence Reads Obtained from Three Next-Generation Sequencing Platforms

Shingo Suzuki, Naoaki Ono, [ ... ], Tetsuya Yomo

The Sensitivity of Massively Parallel Sequencing for Detecting Candidate Infectious Agents Associated with Human Tissue

Richard A. Moore, René L. Warren, [ ... ], Robert A. Holt

Selection and Validation of Reference Genes for Quantitative Real-Time PCR in Buckwheat (Fagopyrum esculentum) Based on Transcriptome Sequence Data

Natalia V. Demidenko, Maria D. Logacheva, Aleksey A. Penin

Targeted Assembly of Short Sequence Reads

René L. Warren, Robert A. Holt

Protocol Dependence of Sequencing-Based Gene Expression Measurements

Tal Raz, Philipp Kapranov, [ ... ], John F. Thompson

Sequencing-Based Approaches Reveal Low Ambient Temperature-Responsive and Tissue-Specific MicroRNAs in Phalaenopsis Orchid

Feng-Ming An, Shuan-Rung Hsiao, Ming-Tsair Chan

The Human Airway Epithelial Basal Cell Transcriptome

Neil R. Hackett, Renat Shaykhiev, [ ... ], Ronald G. Crystal

Exploring Metabolic Pathway Reconstruction and Genome-Wide Expression Profiling in Lactobacillus reuteri to Define Functional Probiotic Features

Delphine M. Saulnier, Filipe Santos, [ ... ], James Versalovic

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