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Transcriptome analysis

RNA Sequencing Reveals Differential Expression of Mitochondrial and Oxidation Reduction Genes in the Long-Lived Naked Mole-Rat When Compared to Mice

Chuanfei Yu, Yang Li, Andrew Holmes, Karol Szafranski, Chris G. Faulkes, Clive W. Coen, Rochelle Buffenstein, Matthias Platzer, João Pedro de Magalhães, George M. Church

published 03 Nov 2011

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Fast and Cost-Effective Mining of Microsatellite Markers Using NGS Technology: An Example of a Korean Water Deer Hydropotes inermis argyropus

Jeong-Nam Yu, Changman Won, Jumin Jun, YoungWoon Lim, Myounghai Kwak

published 01 Nov 2011

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The Transcriptome of the Reference Potato Genome Solanum tuberosum Group Phureja Clone DM1-3 516R44

Alicia N. Massa, Kevin L. Childs, Haining Lin, Glenn J. Bryan, Giovanni Giuliano, C. Robin Buell

published 28 Oct 2011

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A Novel Metagenomic Short-Chain Dehydrogenase/Reductase Attenuates Pseudomonas aeruginosa Biofilm Formation and Virulence on Caenorhabditis elegans

Patrick Bijtenhoorn, Hubert Mayerhofer, Jochen Müller-Dieckmann, Christian Utpatel, Christina Schipper, Claudia Hornung, Matthias Szesny, Stephanie Grond, Andrea Thürmer, Elzbieta Brzuszkiewicz, Rolf Daniel, Katja Dierking, Hinrich Schulenburg, Wolfgang R. Streit

published 26 Oct 2011

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Clinical Proteomics of the Neglected Human Malarial Parasite Plasmodium vivax

Pragyan Acharya, Rani Pallavi, Syama Chandran, Vrushali Dandavate, Syed Khund Sayeed, Ankit Rochani, Jyoti Acharya, Sheetal Middha, Sanjay Kochar, Dhanpat Kochar, Susanta Kumar Ghosh, Utpal Tatu

published 20 Oct 2011

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Resources and Costs for Microbial Sequence Analysis Evaluated Using Virtual Machines and Cloud Computing

Samuel V. Angiuoli, James R. White, Malcolm Matalka, Owen White, W. Florian Fricke

published 19 Oct 2011

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Differential Expression of Extracellular Matrix-Mediated Pathways in Single-Suture Craniosynostosis

Brendan D. Stamper, Sarah S. Park, Richard P. Beyer, Theo K. Bammler, Frederico M. Farin, Brig Mecham, Michael L. Cunningham

published 19 Oct 2011

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ConDeTri - A Content Dependent Read Trimmer for Illumina Data

Linnéa Smeds, Axel Künstner

published 19 Oct 2011

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RNA-Seq Analyses Generate Comprehensive Transcriptomic Landscape and Reveal Complex Transcript Patterns in Hepatocellular Carcinoma

Qichao Huang, Biaoyang Lin, Hanqiang Liu, Xi Ma, Fan Mo, Wei Yu, Lisha Li, Hongwei Li, Tian Tian, Dong Wu, Feng Shen, Jinliang Xing, Zhi-Nan Chen

published 17 Oct 2011

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Examination of Triacylglycerol Biosynthetic Pathways via De Novo Transcriptomic and Proteomic Analyses in an Unsequenced Microalga

Michael T. Guarnieri, Ambarish Nag, Sharon L. Smolinski, Al Darzins, Michael Seibert, Philip T. Pienkos

published 17 Oct 2011

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Suppression of the Imprinted Gene NNAT and X-Chromosome Gene Activation in Isogenic Human iPS Cells

Jonathan H. Teichroeb, Dean H. Betts, Homayoun Vaziri

published 12 Oct 2011

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Expression Profiling without Genome Sequence Information in a Non-Model Species, Pandalid Shrimp (Pandalus latirostris), by Next-Generation Sequencing

Ryouka Kawahara-Miki, Kenta Wada, Noriko Azuma, Susumu Chiba

published 10 Oct 2011

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Human Cancer Long Non-Coding RNA Transcriptomes

Ewan A. Gibb, Emily A. Vucic, Katey S. S. Enfield, Greg L. Stewart, Kim M. Lonergan, Jennifer Y. Kennett, Daiana D. Becker-Santos, Calum E. MacAulay, Stephen Lam, Carolyn J. Brown, Wan L. Lam

published 03 Oct 2011

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