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Transcriptome analysis

An Improved Protocol for Sequencing of Repetitive Genomic Regions and Structural Variations Using Mutagenesis and Next Generation Sequencing

Botond Sipos, Tim Massingham, Adrian M. Stütz, Nick Goldman

published 17 Aug 2012

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Global Transcriptome Analysis of the Scorpion Centruroides noxius: New Toxin Families and Evolutionary Insights from an Ancestral Scorpion Species

Martha Rendón-Anaya, Luis Delaye, Lourival D. Possani, Alfredo Herrera-Estrella

published 17 Aug 2012

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Comparative Transcriptome Profiling of Chilling Stress Responsiveness in Two Contrasting Rice Genotypes

Ting Zhang, Xiuqin Zhao, Wensheng Wang, Yajiao Pan, Liyu Huang, Xiaoyue Liu, Ying Zong, Linghua Zhu, Daichang Yang, Binying Fu

published 17 Aug 2012

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Transcriptomics and Comparative Analysis of Three Antarctic Notothenioid Fishes

Seung Chul Shin, Su Jin Kim, Jong Kyu Lee, Do Hwan Ahn, Min Gyu Kim, Hyoungseok Lee, Jungeun Lee, Bum-Keun Kim, Hyun Park

published 16 Aug 2012

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Mutation Discovery in Regions of Segmental Cancer Genome Amplifications with CoNAn-SNV: A Mixture Model for Next Generation Sequencing of Tumors

Anamaria Crisan, Rodrigo Goya, Gavin Ha, Jiarui Ding, Leah M. Prentice, Arusha Oloumi, Janine Senz, Thomas Zeng, Kane Tse, Allen Delaney, Marco A. Marra, David G. Huntsman, Martin Hirst, Sam Aparicio, Sohrab Shah

published 16 Aug 2012

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Estimates of Genetic Differentiation Measured by F_ST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers

Eva-Maria Willing, Christine Dreyer, Cock van Oosterhout

published 14 Aug 2012

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De Novo Sequencing and Characterization of the Floral Transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae)

Xue-Mei Zhang, Lei Zhao, Zachary Larson-Rabin, De-Zhu Li, Zhen-Hua Guo

published 14 Aug 2012

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RNA-Seq Analysis of the Sclerotinia homoeocarpa – Creeping Bentgrass Pathosystem

Angela M. Orshinsky, Jinnan Hu, Stephen O. Opiyo, Venu Reddyvari-Channarayappa, Thomas K. Mitchell, Michael J. Boehm

published 08 Aug 2012

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Transcriptome Profiling of the Cancer, Adjacent Non-Tumor and Distant Normal Tissues from a Colorectal Cancer Patient by Deep Sequencing

Yan'an Wu, Xuetao Wang, Fangbo Wu, Ruolei Huang, Fangqin Xue, Guantao Liang, Min Tao, Pengwei Cai, Yi Huang

published 08 Aug 2012

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SAP—A Sequence Mapping and Analyzing Program for Long Sequence Reads Alignment and Accurate Variants Discovery

Zheng Sun, Weidong Tian

published 07 Aug 2012

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SNP Discovery Using Next Generation Transcriptomic Sequencing in Atlantic Herring (Clupea harengus)

Sarah J. Helyar, Morten T. Limborg, Dorte Bekkevold, Massimiliano Babbucci, Jeroen van Houdt, Gregory E. Maes, Luca Bargelloni, Rasmus O. Nielsen, Martin I. Taylor, Rob Ogden, Alessia Cariani, Gary R. Carvalho, FishPopTrace Consortium, Frank Panitz

published 07 Aug 2012

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Discovery of Genes Related to Insecticide Resistance in Bactrocera dorsalis by Functional Genomic Analysis of a De Novo Assembled Transcriptome

Ju-Chun Hsu, Ting-Ying Chien, Chia-Cheng Hu, Mei-Ju May Chen, Wen-Jer Wu, Hai-Tung Feng, David S. Haymer, Chien-Yu Chen

published 07 Aug 2012

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Computational Selection of Transcriptomics Experiments Improves Guilt-by-Association Analyses

Prajwal Bhat, Haixuan Yang, László Bögre, Alessandra Devoto, Alberto Paccanaro

published 07 Aug 2012

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