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Transcriptome analysis

A Model-Based Clustering Method for Genomic Structural Variant Prediction and Genotyping Using Paired-End Sequencing Data

Matthew Hayes, Yoon Soo Pyon, Jing Li

published 27 Dec 2012

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SNP Design from 454 Sequencing of Podosphaera plantaginis Transcriptome Reveals a Genetically Diverse Pathogen Metapopulation with High Levels of Mixed-Genotype Infection

Charlotte Tollenaere, Hanna Susi, Jussi Nokso-Koivisto, Patrik Koskinen, Ayco Tack, Petri Auvinen, Lars Paulin, Mikko J. Frilander, Rainer Lehtonen, Anna-Liisa Laine

published 27 Dec 2012

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Comparative Analysis of Kabuli Chickpea Transcriptome with Desi and Wild Chickpea Provides a Rich Resource for Development of Functional Markers

Gaurav Agarwal, Shalu Jhanwar, Pushp Priya, Vikash K. Singh, Maneesha S. Saxena, Swarup K. Parida, Rohini Garg, Akhilesh K. Tyagi, Mukesh Jain

published 27 Dec 2012

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Development of Transcriptomic Resources for Interrogating the Biosynthesis of Monoterpene Indole Alkaloids in Medicinal Plant Species

Elsa Góngora-Castillo, Kevin L. Childs, Greg Fedewa, John P. Hamilton, David K. Liscombe, Maria Magallanes-Lundback, Kranthi K. Mandadi, Ezekiel Nims, Weerawat Runguphan, Brieanne Vaillancourt, Marina Varbanova-Herde, Dean DellaPenna, Thomas D. McKnight, Sarah O’Connor, C. Robin Buell

published 26 Dec 2012

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Anti-Inflammatory Lactobacillus rhamnosus CNCM I-3690 Strain Protects against Oxidative Stress and Increases Lifespan in Caenorhabditis elegans

Gianfranco Grompone, Patricia Martorell, Silvia Llopis, Núria González, Salvador Genovés, Ana Paula Mulet, Tamara Fernández-Calero, Inés Tiscornia, Mariela Bollati-Fogolín, Isabelle Chambaud, Benoit Foligné, Agustín Montserrat, Daniel Ramón

published 26 Dec 2012

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A Comprehensive Evaluation of Alignment Algorithms in the Context of RNA-Seq

Robert Lindner, Caroline C. Friedel

published 26 Dec 2012

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SNP Detection from De Novo Transcriptome Sequencing in the Bivalve Macoma balthica: Marker Development for Evolutionary Studies

Eric Pante, Audrey Rohfritsch, Vanessa Becquet, Khalid Belkhir, Nicolas Bierne, Pascale Garcia

published 26 Dec 2012

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Ocean Acidification Affects Redox-Balance and Ion-Homeostasis in the Life-Cycle Stages of Emiliania huxleyi

Sebastian D. Rokitta, Uwe John, Björn Rost

published 26 Dec 2012

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A Genome-Wide Investigation of Expression Characteristics of Natural Antisense Transcripts in Liver and Muscle Samples of Pigs

Congying Chen, Rongxing Wei, Ruimin Qiao, Jun Ren, Hui Yang, Chenlong Liu, Lusheng Huang

published 20 Dec 2012

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FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

Haibin Xu, Xiang Luo, Jun Qian, Xiaohui Pang, Jingyuan Song, Guangrui Qian, Jinhui Chen, Shilin Chen

published 20 Dec 2012

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Prospective Transcriptomic Pathway Analysis of Human Lymphatic Vascular Insufficiency: Identification and Validation of a Circulating Biomarker Panel

Shin Lin, Jeanna Kim, Mi-Joung Lee, Leslie Roche, Nancy L. Yang, Philip S. Tsao, Stanley G. Rockson

published 18 Dec 2012

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Genome-Wide Transcriptome and Proteome Analysis on Different Developmental Stages of Cordyceps militaris

Yalin Yin, Guojun Yu, Yijie Chen, Shuai Jiang, Man Wang, Yanxia Jin, Xianqing Lan, Yi Liang, Hui Sun

published 14 Dec 2012

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Identification of a Transcription Factor Controlling pH-Dependent Organic Acid Response in Aspergillus niger

Lars Poulsen, Mikael Rørdam Andersen, Anna Eliasson Lantz, Jette Thykaer

published 12 Dec 2012

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