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Transcriptome analysis

A Comparison of the Olfactory Gene Repertoires of Adults and Larvae in the Noctuid Moth Spodoptera littoralis

Erwan Poivet, Aurore Gallot, Nicolas Montagné, Nicolas Glaser, Fabrice Legeai, Emmanuelle Jacquin-Joly

published 02 Apr 2013

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QC-Chain: Fast and Holistic Quality Control Method for Next-Generation Sequencing Data

Qian Zhou, Xiaoquan Su, Anhui Wang, Jian Xu, Kang Ning

published 02 Apr 2013

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Study of Global Transcriptional Changes of N-GlcNAc₂ Proteins-Producing T24 Bladder Carcinoma Cells under Glucose Deprivation

Takahiro Isono, Tokuhiro Chano, Hidetoshi Okabe, Masafumi Suzaki

published 01 Apr 2013

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Transcriptome Sequencing and Analysis of Wild Amur Ide (Leuciscus waleckii) Inhabiting an Extreme Alkaline-Saline Lake Reveals Insights into Stress Adaptation

Jian Xu, Peifeng Ji, Baosen Wang, Lan Zhao, Jian Wang, Zixia Zhao, Yan Zhang, Jiongtang Li, Peng Xu, Xiaowen Sun

published 01 Apr 2013

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RNA-Seq Analysis of Cocos nucifera: Transcriptome Sequencing and De Novo Assembly for Subsequent Functional Genomics Approaches

Haikuo Fan, Yong Xiao, Yaodong Yang, Wei Xia, Annaliese S. Mason, Zhihui Xia, Fei Qiao, Songlin Zhao, Haoru Tang

published 29 Mar 2013

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CISA: Contig Integrator for Sequence Assembly of Bacterial Genomes

Shin-Hung Lin, Yu-Chieh Liao

published 28 Mar 2013

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Transcriptomic Analysis of Streptomyces coelicolor Differentiation in Solid Sporulating Cultures: First Compartmentalized and Second Multinucleated Mycelia Have Different and Distinctive Transcriptomes

Paula Yagüe, Antonio Rodríguez-García, María T. López-García, Juan F. Martín, Beatriz Rioseras, Jesús Sánchez, Angel Manteca

published 28 Mar 2013

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Gene Regulation by CcpA and Catabolite Repression Explored by RNA-Seq in Streptococcus mutans

Lin Zeng, Sang Chul Choi, Charles G. Danko, Adam Siepel, Michael J. Stanhope, Robert A. Burne

published 28 Mar 2013

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Environmentally Induced Epigenetic Transgenerational Inheritance of Altered Sertoli Cell Transcriptome and Epigenome: Molecular Etiology of Male Infertility

Carlos Guerrero-Bosagna, Marina Savenkova, Md. Muksitul Haque, Eric Nilsson, Michael K. Skinner

published 28 Mar 2013

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Clustering and Alignment of Polymorphic Sequences for HLA-DRB1 Genotyping

Steven Ringquist, Gaia Bellone, Ying Lu, Kathryn Roeder, Massimo Trucco

published 28 Mar 2013

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De Novo Transcriptome Sequence Assembly and Analysis of RNA Silencing Genes of Nicotiana benthamiana

Kenlee Nakasugi, Ross N. Crowhurst, Julia Bally, Craig C. Wood, Roger P. Hellens, Peter M. Waterhouse

published 28 Mar 2013

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Genes Related to Ion-Transport and Energy Production Are Upregulated in Response to CO₂-Driven pH Decrease in Corals: New Insights from Transcriptome Analysis

Jeremie Vidal-Dupiol, Didier Zoccola, Eric Tambutté, Christoph Grunau, Céline Cosseau, Kristina M. Smith, Michael Freitag, Nolwenn M. Dheilly, Denis Allemand, Sylvie Tambutté

published 27 Mar 2013

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Development of Strategies for SNP Detection in RNA-Seq Data: Application to Lymphoblastoid Cell Lines and Evaluation Using 1000 Genomes Data

Emma M. Quinn, Paul Cormican, Elaine M. Kenny, Matthew Hill, Richard Anney, Michael Gill, Aiden P. Corvin, Derek W. Morris

published 26 Mar 2013

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