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Transcriptome analysis

Genomic diversity, host associations, and tissue tropism of Hydrangea ringspot virus: A global and regional perspective

Juliana Osorio-Marulanda, Juliana Lopez-Jimenez, Juan F. Alzate

Integrative transcriptomics identifies an 18-gene candidate blood-accessible biomarker panel for longitudinal monitoring of spaceflight-induced muscle atrophy

Jae Ho Shim, Ji Yeon Lee, Jihye Han, Hyeon Soo Kim

Shenling Qige Granules inhibit esophageal squamous cell carcinoma progression in TE-1 xenograft and cell-based models by modulating the DCN–TGF-β/Smad signaling axis

Zihui Liu, Yiting Gu, [ ... ], Zhihua Du

Integrated multi-omic analysis characterizes an IFNγ-responsive-to-myeloid-suppressive immune continuum in immune-active hepatocellular carcinoma

Luping Lin, Ningna Weng, [ ... ], Xiao Chen

GP-DHT: A dual-head transformer with supervised contrastive learning for shared-gene pretraining and single-cell GRN prediction

Shuai Yan, Qingzhi Yu, Wenfeng Dai, Xiang Cheng

Rigorous validation of graph-based network analysis reappraises biologically coherent ADHD-associated transcriptomic modules in peripheral blood

Nehal M. Ali

Sub-consensus haploid variant calling in long-read sequencing technology

Xavier Zair, Andreas Wilm, [ ... ], Swapnil Mishra

Multi-omics integration reveals tissue-specific biosynthesis of sesquiterpenoids in the medicinal plant Eupatorium lindleyanum

Yingzhe Wang, Pan Jiang, [ ... ], Kun Guo

An epithelial–mesenchymal transition-like synovial stromal-remodeling programme associated with knee osteoarthritis pain: Exploratory transcriptomic discovery and spatial analysis

Diovanni de Paula Ferreira, Rafael de Negreiros Botan, Wagner R. Martins, Iruena M. Kessler

Peripheral blood transcriptomes and a single-cell atlas suggest a monocyte-associated immune recovery-failure axis in STEMI

Qi Cheng, Qunxing Li, Delu Yin

Dioscin attenuates D‑galactose‑induced retinal pigment epithelium senescence and epithelial–mesenchymal transition via the TGF‑β2/PI3K/Akt/β‑catenin pathway

Qi Ouyang, Huiqin Zhou, [ ... ], Xiang Hu

Integrative computational analysis of public fecal lipidomics and transcriptomics datasets suggests a candidate association between the COX-2 pathway and CE(20:4) in colorectal adenoma-carcinoma progression

Bing Tang, Yanru Chen, Xia Yang, Hanlin Gong

Integrative transcriptomic analysis of peripheral blood identifies NETosis-associated programs and a stratified adaptive immune suppression pattern in severe acute pancreatitis

Yaobin He, Kairui Liu, [ ... ], Youxing Huang

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