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Transcriptome analysis

Analysis of metabolomics and transcriptomics data to assess interactions in microalgal co-culture of Skeletonema marinoi and Prymnesium parvum

Mahnoor Zulfiqar, Anne-Susann Abel, Emanuel Barth, Kristy Syhapanha, Remington Xavier Poulin, Sassrika Nethmini Costa Warnakulasuriya Dehiwalage, Georg Pohnert, Christoph Steinbeck, Kristian Peters, Maria Sorokina

published 28 Jul 2025

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An autoencoder learning method for predicting breast cancer subtypes

Zahra Rostami, Kavitha Mukund, Maryam Masnadi-Shirazi, Shankar Subramaniam

published 23 Jul 2025

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Quiescence modulates age-related changes in the functional capacity of highly proliferative canine lung mesenchymal stromal cell populations

Nakesha Agyapong, Leslie Dominguez-Ortega, Brian Macdonough, Patrick Mulluso, Sagar Patel, Briti Prajapati, Brian Saville, Andrew Shapiro, Ethan Trim, Kara Battaglia, Jocelyn Herrera, Gianna Garifo-MacPartland, Dianne Newcomb, Latoya Okundaye, Heather Paglia, Julia Paxson

published 23 Jul 2025

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Skin transcriptomics of invasive Coqui frogs: stress responses, parasite signatures, and antimicrobial peptides

Randy Ortiz, Leeann C. Dabydeen, Carolyn Kosinski, Priyanka Gera, Juan D. Carvajal-Castro, Victoria Akilov, Hunter J. Howell, Emily Powell, Juan C. Santos

published 17 Jul 2025

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Transcriptomic and metabolomic profiling of the potato plant response to zebra chip disease

Margaret A. Carpenter, Tonya J. Frew, Helen L. Boldingh, Simona Nardozza, Martin L. Shaw, Susan J. Thomson, Rebecca D. Cooper, Gail M. Timmerman-Vaughan

published 09 Jul 2025

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ABC transporters knockout in Aedes aegypti induces upregulation of paralogous genes, avoiding resistance development to Bacillus thuringiensis Cry toxins

Sabino Pacheco, Marcos Chiñas, Juan Ulises Gómez, Ángel Enrique Peláez-Aguilar, Nathaly Alexandre do Nascimento, Pablo Emiliano Cantón, Jorge Sánchez, Samira López-Molina, Isabel Gómez, Mario Soberón, Alejandra Bravo

published 03 Jul 2025

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Next-Generation Sequencing (NGS) in non-small cell lung carcinoma: A real-world experience in the public health system of Galicia (Northwest Spain)

Ihab Abdulkader-Nallib, José Manuel Cameselle-Teijeiro, Iván Lesende-Rodríguez, Raquel Pérez-Becerra, José Ramón Antúnez-López, Jorge García-González, Luis León-Mateos, María Sánchez-Ares

published 01 Jul 2025

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Integrative analysis of the metabolome and transcriptome provides insights into the mechanisms of amino acids and their derivatives biosynthesis in Polygonatum

Xiuzhi Wang, Lingjun Cui, Qiang Xiao

published 25 Jun 2025

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Transcriptomic sequencing and expression verification of identified genes modulating the alkali stress tolerance and endogenous photosynthetic activities of industrial hemp plant

Zeyu Jiang, Di Wang, Ye Che, Sikandar Amanullah, Ling Zhang, Siyuan Jie, Wei Yang, Mingze Wang, Lina Wang, Guochao Qi

published 25 Jun 2025

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Identification of differentially expressed genes and proteins related to diapause in Lymantria dispar: Insights for the mechanism of diapause from transcriptome and proteome analyses

Qing Xie, Xiaofan Ma, Yafei Li, Wenzhuai Ji, Fengrui Dou, Xiue Zhu, Juan Shi, Yixia Cao

published 25 Jun 2025

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Identification of key genes associated with anthracnose resistance in Camellia sinensis

Li-Yi Xu, Jing-Jing Su, Cheng-Kang Zhang, Min Hao, Zi-Wei Zhou, Xiao-Hui Chen, Shi-Zhong Zheng

published 24 Jun 2025

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Genomic profiling in hidradenitis suppurativa: InterOmics pipeline for DNA-RNA sequencing highlights HLA variants, keratin-associated mutations and extracellular matrix alterations as contributing factors to HS pathogenesis

Lucas André Cavalcanti Brandão, Ronald Rodrigues de Moura, Bruno Rodrigo Assunção, Cecilia Del Vecchio, Adamo Pio d’Adamo, Gudrun Ratzinger, Barbara Böckle, Nina Frischhut, Wolfram Jaschke, Matthias Schmuth, Muhammad Suleman, Angelo Valerio Marzano, Chiara Moltrasio, Paola Maura Tricarico, Sergio Crovella

published 20 Jun 2025

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Time matters: Transcriptomic insights into temporally regulated reproductive and physiological processes in the life cycle of salps

Svenja J. Müller, Ilenia Urso, Sara Driscoll, Katharina Michael, Gabriele Sales, Cristiano de Pittà, Wiebke Wessels, Bettina Meyer

published 20 Jun 2025

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