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Transcriptome analysis

Targeted fetal NGS panel reveals genetic conditions in sonographically normal fetuses: Insights from a large cohort study

Han-Ying Chen, Yi-Ting Wang, Jessica Kang, Yi-Yun Tai, Ti-Jia Yuan, Shin-Yu Lin, Shi-Ming Lin, Chien-Nan Lee, Tsang-Ming Ko

published 02 Dec 2025

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Early upregulation of immune suppressors dominates the macrophage response to Toxoplasma gondii

Dominykas Murza, Filip Lastovka, George Wood, Matthew P. Brember, Oliver Chan, James W. Ajioka, Betty Y. W. Chung

published 24 Nov 2025

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Single-cell transcriptomics profiling reveals cellular origins and molecular drivers underlying melanoma brain metastasis

Jingxin Zeng, Ling Lin, Yangyang Ma, Wenzhe Huang, Quan Luo, Ju Wen

published 24 Nov 2025

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Multi-omics analysis indicates an association between TAPBP and prostate cancer

Xinlong Wang, Aimin Jiang, Chao Li, Zhiyong Liu

published 21 Nov 2025

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Genome- and transcriptome-wide association meta-analysis reveals new insights into genes affecting coronary and peripheral artery disease

Michael Rode, Maciej Rosolowski, Katrin Horn, Sylvia Henger, Andrej Teren, Kerstin Wirkner, Joachim Thiery, Markus Loeffler, Janne Pott, Holger Kirsten, Markus Scholz

published 18 Nov 2025

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Transcriptomics insights into the functional role of tick Ixodes ricinus proteins metalloprotease and antigen p23

Rita Vaz-Rodrigues, Vincent C. Duru, Ard M. Nijhof, José de la Fuente

published 14 Nov 2025

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Development of SSR markers related to salinity resistance based on transcriptomic sequences in Medicago sativa

Rugang Yu, Xin Chen, Hui Zhang, Qiting Zhang, Xinyi Chen, Yanqiu Dong, Liwei Chen, Daniel Basigalup, Guoliang Wang, Xueling Du

published 14 Nov 2025

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ReadSeeker: A DNABERT based de-novo read-level gene predictor

Ben Wulf, Piotr Wojciech Dabrowski

published 13 Nov 2025

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Multi-omics analysis reveals metabolic regulation of phosphatidylcholine, triglycerides, phosphatidylethanolamine, and cardiolipin metabolism in mouse liver with metabolic dysfunction-associated steatotic liver disease

Hong Liang, Kang Song

published 07 Nov 2025

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A joint complex network and machine learning approach for the identification of discriminative gene communities in autistic brain

Antonio Lacalamita, Ester Pantaleo, Alfonso Monaco, Loredana Bellantuono, Alessandro Fania, Marianna La Rocca, Tommaso Maggipinto, Sabina Tangaro, Nicola Amoroso, Roberto Bellotti

published 05 Nov 2025

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Harnessing genetic diversity: The genomic and transcriptomic insights of Eugenia uniflora for environmental resilience

Isabel Cristina Cadavid Sánchez, Edgar L. Waschburger, Rita M.C. de Almeida, Alexandre Nascimento de Vargas, Guilherme Loss de Morais, Jimena Giraldo Flores, Dámaris Esquén Bayona, Rogerio Margis, Andreia Carina Turchetto-Zolet, Frank Lino Guzman Escudero

published 04 Nov 2025

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DNA/RNA hybrid profiling in autistic patients: A focus on mRNA and non-coding RNA variations

Leila Kianmehr, Kasra MokhtarZadeh, Zeynep Yilmaz, Hadi Darzi Ramandi, Ecmel Mehmetbeyoglu Duman, Elif Funda Sener, Serpil Taheri, Minoo Rassoulzadegan

published 03 Nov 2025

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Multiplets in scRNA-seq data: Extent of the problem and efficacy of methods for removal

Dimitris Ttoouli, Daniel Hoffmann

published 30 Oct 2025

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