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Transcriptome analysis

Assessment of the quality of DNA from various formalin-fixed paraffin-embedded (FFPE) tissues and the use of this DNA for next-generation sequencing (NGS) with no artifactual mutation

Naoki Einaga, Akio Yoshida, Hiroko Noda, Masaaki Suemitsu, Yuki Nakayama, Akihisa Sakurada, Yoshiko Kawaji, Hiromi Yamaguchi, Yasushi Sasaki, Takashi Tokino, Mariko Esumi

published 12 May 2017

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No evidence of genome editing activity from Natronobacterium gregoryi Argonaute (NgAgo) in human cells

Parisa Javidi-Parsijani, Guoguang Niu, Meghan Davis, Pin Lu, Anthony Atala, Baisong Lu

published 11 May 2017

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Pathogenic variants screening in seventeen candidate genes on 2p15 for association with ankylosing spondylitis in a Han Chinese population

Mengmeng Wang, Lihong Xin, Guoqi Cai, Xu Zhang, Xiao Yang, Xiaona Li, Qing Xia, Li Wang, Shengqian Xu, Jianhua Xu, Zongwen Shuai, Changhai Ding, Faming Pan

published 11 May 2017

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The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.)

Bart Verwaaijen, Daniel Wibberg, Magdalena Kröber, Anika Winkler, Rita Zrenner, Hanna Bednarz, Karsten Niehaus, Rita Grosch, Alfred Pühler, Andreas Schlüter

published 09 May 2017

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Genome and transcriptome profiling of fibrolamellar hepatocellular carcinoma demonstrates p53 and IGF2BP1 dysregulation

Eric C. Sorenson, Raya Khanin, Zubin M. Bamboat, Michael J. Cavnar, Teresa S. Kim, Eran Sadot, Shan Zeng, Jonathan B. Greer, Adrian M. Seifert, Noah A. Cohen, Megan H. Crawley, Benjamin L. Green, David S. Klimstra, Ronald P. DeMatteo

published 09 May 2017

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Gene expression plasticity across hosts of an invasive scale insect species

Nicholas Christodoulides, Alex R. Van Dam, Daniel A. Peterson, Rasmus John Normand Frandsen, Uffe Hasbro Mortensen, Bent Petersen, Simon Rasmussen, Benjamin B. Normark, Nate B. Hardy

published 04 May 2017

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Transcriptome analysis of muskrat scented glands degeneration mechanism

Yimeng Li, Tianxiang Zhang, Juntong Zhou, Shuang Yang, Mengyuan Fan, Xiaoning Sun, Meishan Zhang, Shanghua Xu, Muha Cha, Xiaolong Hu, Lei Qi, Shaobi Lin, Shuqiang Liu, Defu Hu

published 04 May 2017

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Ubiquitin carboxyl-terminal esterase L1 (UCHL1) is associated with stem-like cancer cell functions in pediatric high-grade glioma

Patricia C. Sanchez-Diaz, Judy C. Chang, Emily S. Moses, Tu Dao, Yidong Chen, Jaclyn Y. Hung

published 04 May 2017

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Crude oil impairs immune function and increases susceptibility to pathogenic bacteria in southern flounder

Keith M. Bayha, Natalie Ortell, Caitlin N. Ryan, Kimberly J. Griffitt, Michelle Krasnec, Johnny Sena, Thiruvarangan Ramaraj, Ryan Takeshita, Gregory D. Mayer, Faye Schilkey, Robert J. Griffitt

published 02 May 2017

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Optimized approach for Ion Proton RNA sequencing reveals details of RNA splicing and editing features of the transcriptome

Roger B. Brown, Nathaniel J. Madrid, Hideaki Suzuki, Scott A. Ness

published 01 May 2017

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Altered nucleocytoplasmic proteome and transcriptome distributions in an in vitro model of amyotrophic lateral sclerosis

Jee-Eun Kim, Yoon Ho Hong, Jin Young Kim, Gye Sun Jeon, Jung Hee Jung, Byung-Nam Yoon, Sung-Yeon Son, Kwang-Woo Lee, Jong-Il Kim, Jung-Joon Sung

published 28 Apr 2017

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Transcriptomic analysis of the hepatic response to stress in the red cusk-eel (Genypterus chilensis): Insights into lipid metabolism, oxidative stress and liver steatosis

Sebastian Naour, Brisa M. Espinoza, Jorge E. Aedo, Rodrigo Zuloaga, Jonathan Maldonado, Macarena Bastias-Molina, Herman Silva, Claudio Meneses, Cristian Gallardo-Escarate, Alfredo Molina, Juan Antonio Valdés

published 27 Apr 2017

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Zika infection of neural progenitor cells perturbs transcription in neurodevelopmental pathways

Lynn Yi, Harold Pimentel, Lior Pachter

published 27 Apr 2017

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