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Transcriptome analysis

RNA-Seq differential expression analysis: An extended review and a software tool

Juliana Costa-Silva, Douglas Domingues, Fabricio Martins Lopes

Resistance Exercise Reverses Aging in Human Skeletal Muscle

Simon Melov, Mark A. Tarnopolsky, [ ... ], Alan Hubbard

Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells

Shanrong Zhao, Wai-Ping Fung-Leung, [ ... ], Xuejun Liu

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

Ravi K. Patel, Mukesh Jain

Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

Chengwei Luo, Despina Tsementzi, [ ... ], Konstantinos T. Konstantinidis

An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis

Cristian Del Fabbro, Simone Scalabrin, Michele Morgante, Federico M. Giorgi

A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

Wenyu Zhang, Jiajia Chen, [ ... ], Bairong Shen

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

Patrick D. Schloss, Dirk Gevers, Sarah L. Westcott

Examining Sources of Error in PCR by Single-Molecule Sequencing

Vladimir Potapov, Jennifer L. Ong

Single-nucleus and single-cell transcriptomes compared in matched cortical cell types

Trygve E. Bakken, Rebecca D. Hodge, [ ... ], Bosiljka Tasic

Analytical and Clinical Validation of a Digital Sequencing Panel for Quantitative, Highly Accurate Evaluation of Cell-Free Circulating Tumor DNA

Richard B. Lanman, Stefanie A. Mortimer, [ ... ], AmirAli Talasaz

Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing

Shunsuke Takahashi, Junko Tomita, [ ... ], Miyuki Nishijima

SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data

Rasmus Nielsen, Thorfinn Korneliussen, [ ... ], Jun Wang

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