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Transcriptome analysis

Benchmarking ensemble and deep learning models for drought-responsive gene prioritisation in rice using multi-omics data

Kumanan N. Govaichelvan, Dharini Pathmanathan, Rabiatul Adawiah Zainal-Abidin, Arpah Abu

Intercellular GAS6-AXL signaling triggers podocyte cuproptosis in acute kidney injury upstream regulated by CEBPD

Jingmei Liang, Yuyun Hu, Bing Liao

Transcriptomic analysis of zebrafish (Danio rerio) liver exposed to sediments from the Loa River

Nataly Lobos-Parra, Natalia V. Leiva, [ ... ], Rodrigo Orrego

Identification of shared diagnostic biomarkers and immune-related mechanisms between sepsis and thoracic aortic aneurysm based on integrated bioinformatics and machine learning approaches

Chengqun She, Hao Deng, [ ... ], Juan Wu

Genomic diversity, host associations, and tissue tropism of Hydrangea ringspot virus: A global and regional perspective

Juliana Osorio-Marulanda, Juliana Lopez-Jimenez, Juan F. Alzate

Integrative transcriptomics identifies an 18-gene candidate blood-accessible biomarker panel for longitudinal monitoring of spaceflight-induced muscle atrophy

Jae Ho Shim, Ji Yeon Lee, Jihye Han, Hyeon Soo Kim

Shenling Qige Granules inhibit esophageal squamous cell carcinoma progression in TE-1 xenograft and cell-based models by modulating the DCN–TGF-β/Smad signaling axis

Zihui Liu, Yiting Gu, [ ... ], Zhihua Du

Integrated multi-omic analysis characterizes an IFNγ-responsive-to-myeloid-suppressive immune continuum in immune-active hepatocellular carcinoma

Luping Lin, Ningna Weng, [ ... ], Xiao Chen

GP-DHT: A dual-head transformer with supervised contrastive learning for shared-gene pretraining and single-cell GRN prediction

Shuai Yan, Qingzhi Yu, Wenfeng Dai, Xiang Cheng

Rigorous validation of graph-based network analysis reappraises biologically coherent ADHD-associated transcriptomic modules in peripheral blood

Nehal M. Ali

Sub-consensus haploid variant calling in long-read sequencing technology

Xavier Zair, Andreas Wilm, [ ... ], Swapnil Mishra

Multi-omics integration reveals tissue-specific biosynthesis of sesquiterpenoids in the medicinal plant Eupatorium lindleyanum

Yingzhe Wang, Pan Jiang, [ ... ], Kun Guo

An epithelial–mesenchymal transition-like synovial stromal-remodeling programme associated with knee osteoarthritis pain: Exploratory transcriptomic discovery and spatial analysis

Diovanni de Paula Ferreira, Rafael de Negreiros Botan, Wagner R. Martins, Iruena M. Kessler

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