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Sequencing techniques

Use of an automated pyrosequencing technique for confirmation of sickle cell disease

Camila Cruz de Martino, Cecilia Salete Alencar, Paula Loureiro, Anna Barbara de Freitas Carneiro-Proietti, Claudia de Alvarenga Máximo, Rosimere Afonso Mota, Daniela Oliveira Werneck Rodrigues, Nelson Gaburo Junior, Shannon Kelly, Ester Cerdeira Sabino, for the International Component of the NHLBI Recipient Epidemiology and Donor Evaluation Study (REDS-III)

published 12 Dec 2019

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California condor microbiomes: Bacterial variety and functional properties in captive-bred individuals

Lindsey Jacobs, Benjamin H. McMahon, Joel Berendzen, Jonathan Longmire, Cheryl Gleasner, Nicolas W. Hengartner, Momchilo Vuyisich, Judith R. Cohn, Marti Jenkins, Andrew W. Bartlow, Jeanne M. Fair

published 11 Dec 2019

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Backward compatibility of whole genome sequencing data with MLVA typing using a new MLVAtype shiny application for Vibrio cholerae

Jérôme Ambroise, Léonid M. Irenge, Jean-François Durant, Bertrand Bearzatto, Godfrey Bwire, O. Colin Stine, Jean-Luc Gala

published 11 Dec 2019

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Exploring thematic structure and predicted functionality of 16S rRNA amplicon data

Stephen Woloszynek, Joshua Chang Mell, Zhengqiao Zhao, Gideon Simpson, Michael P. O’Connor, Gail L. Rosen

published 11 Dec 2019

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RNA-sequencing reveals that STRN, ZNF484 and WNK1 add to the value of mitochondrial MT-COI and COX10 as markers of unstable coronary artery disease

Paul Holvoet, Bernward Klocke, Maarten Vanhaverbeke, Roxane Menten, Peter Sinnaeve, Emma Raitoharju, Terho Lehtimäki, Niku Oksala, Christian Zinser, Stefan Janssens, Karin Sipido, Leo-Pekka Lyytikainen, Stefano Cagnin

published 10 Dec 2019

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Integrating long noncoding RNAs and mRNAs expression profiles of response to Plasmodiophora brassicae infection in Pakchoi (Brassica campestris ssp. chinensis Makino)

Hongfang Zhu, Xiaofeng Li, Dandan Xi, Wen Zhai, Zhaohui Zhang, Yuying Zhu

published 05 Dec 2019

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SparkGA2: Production-quality memory-efficient Apache Spark based genome analysis framework

Hamid Mushtaq, Nauman Ahmed, Zaid Al-Ars

published 05 Dec 2019

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Highly multiplexed quantitative PCR-based platform for evaluation of chicken immune responses

Dominika Borowska, Richard Kuo, Richard A. Bailey, Kellie A. Watson, Pete Kaiser, Lonneke Vervelde, Mark P. Stevens

published 03 Dec 2019

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Autosomal-dominant hypotrichosis with woolly hair: Novel gene locus on chromosome 4q35.1-q35.2

Annika E. Schlaweck, Rachid Tazi-Ahnini, F. Buket Ü. Basmanav, Javed Mohungoo, Sandra M. Pasternack-Ziach, Manuel Mattheisen, Ana-Maria Oprisoreanu, Aytaj Humbatova, Sabrina Wolf, Andrew Messenger, Regina C. Betz

published 02 Dec 2019

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HeLa-CCL2 cell heterogeneity studied by single-cell DNA and RNA sequencing

Wan-er Hu, Xin Zhang, Qiu-fang Guo, Jing-wei Yang, Yuan Yang, Shi-cheng Wei, Xiao-dong Su

published 02 Dec 2019

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Computational search for UV radiation resistance strategies in Deinococcus swuensis isolated from Paramo ecosystems

Jorge Díaz-Riaño, Leonardo Posada, Iván Camilo Acosta, Carlos Ruíz-Pérez, Catalina García-Castillo, Alejandro Reyes, María Mercedes Zambrano

published 02 Dec 2019

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Genetic diversity and drug resistance of HIV-1 among infected pregnant women newly diagnosed in Luanda, Angola

Cruz S. Sebastião, Zoraima Neto, Carlos S. de Jesus, Marinela Mirandela, Domingos Jandondo, José C. Couto-Fernandez, Amilcar Tanuri, Joana Morais, Miguel Brito

published 26 Nov 2019

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Molecular characterization of lung adenocarcinoma from Korean patients using next generation sequencing

You Jin Chun, Jae Woo Choi, Min Hee Hong, Dongmin Jung, Hyeonju Son, Eun Kyung Cho, Young Joo Min, Sang-We Kim, Keunchil Park, Sung Sook Lee, Sangwoo Kim, Hye Ryun Kim, Byoung Chul Cho, Korean Lung Cancer Consortium (KLCC)

published 25 Nov 2019

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