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Sequencing techniques

Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing

Andrei Prodan, Valentina Tremaroli, Harald Brolin, Aeilko H. Zwinderman, Max Nieuwdorp, Evgeni Levin

published 16 Jan 2020

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Quantitative PCR provides a simple and accessible method for quantitative microbiota profiling

Ching Jian, Panu Luukkonen, Hannele Yki-Järvinen, Anne Salonen, Katri Korpela

published 15 Jan 2020

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Intra-host symbiont diversity in eastern Pacific cold seep tubeworms identified by the 16S-V6 region, but undetected by the 16S-V4 region

Corinna Breusing, Maximilian Franke, Curtis Robert Young

published 15 Jan 2020

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Diversity of Mycobacteriaceae from aquatic environment at the São Paulo Zoological Park Foundation in Brazil

Camila Lopes Romagnoli, Katia Cristina Machado Pellegrino, Natalia Maria Silva, Urze Adomaitis Brianesi, Sylvia Cardoso Leão, Michelle Christiane da Silva Rabello, Cristina Viana-Niero

published 14 Jan 2020

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TranCEP: Predicting the substrate class of transmembrane transport proteins using compositional, evolutionary, and positional information

Munira Alballa, Faizah Aplop, Gregory Butler

published 14 Jan 2020

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A bushel of viruses: Identification of seventeen novel putative viruses by RNA-seq in six apple trees

Alice A. Wright, Alex R. Cross, Scott J. Harper

published 13 Jan 2020

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Deep2Full: Evaluating strategies for selecting the minimal mutational experiments for optimal computational predictions of deep mutational scan outcomes

C. K. Sruthi, Meher Prakash

published 10 Jan 2020

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Clinical, cytogenetic and molecular genetic characterization of a tandem fusion translocation in a male Holstein cattle with congenital hypospadias and a ventricular septal defect

Alessandra Iannuzzi, Marina Braun, Viviana Genualdo, Angela Perucatti, Sina Reinartz, Ioannis Proios, Maike Heppelmann, Jürgen Rehage, Kirsten Hülskötter, Andreas Beineke, Julia Metzger, Ottmar Distl

published 10 Jan 2020

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Identification and characterization of miRNAs involved in cold acclimation of zebrafish ZF4 cells

Xiangqin Ji, Penglei Jiang, Juntao Luo, Mengjia Li, Yajing Bai, Junfang Zhang, Bingshe Han

published 10 Jan 2020

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Purification and molecular characterization of phospholipase, antigen 5 and hyaluronidases from the venom of the Asian hornet (Vespa velutina)

Rafael I. Monsalve, Ruth Gutiérrez, Ilka Hoof, Manuel Lombardero

published 10 Jan 2020

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Brief communication: Long-term absence of Langerhans cells alters the gene expression profile of keratinocytes and dendritic epidermal T cells

Qingtai Su, Aurélie Bouteau, Jacob Cardenas, Balaji Uthra, Yuanyaun Wang, Cynthia Smitherman, Jinghua Gu, Botond Z. Igyártó

published 10 Jan 2020

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Characterization of black patina from the Tiber River embankments using Next-Generation Sequencing

Federica Antonelli, Alfonso Esposito, Ludovica Calvo, Valerio Licursi, Philippe Tisseyre, Sandra Ricci, Manuela Romagnoli, Silvano Piazza, Francesca Guerrieri

published 09 Jan 2020

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Molecular evidence for horizontal transmission of chelonid alphaherpesvirus 5 at green turtle (Chelonia mydas) foraging grounds in Queensland, Australia

K. Jones, G. Burgess, A. M. Budd, R. Huerlimann, N. Mashkour, E. Ariel

published 09 Jan 2020

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