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Sequencing techniques

iterb-PPse: Identification of transcriptional terminators in bacterial by incorporating nucleotide properties into PseKNC

Yongxian Fan, Wanru Wang, Qingqi Zhu

published 15 May 2020

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Isolation of a novel species in the genus Cupriavidus from a patient with sepsis using whole genome sequencing

Oh Joo Kweon, Yong Kwan Lim, Hye Ryoun Kim, Tae-Hyoung Kim, Sung-min Ha, Mi-Kyung Lee

published 13 May 2020

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Liquid biopsy-based tumor profiling for metastatic colorectal cancer patients with ultra-deep targeted sequencing

Jun-Kyu Kang, Sunghoon Heo, Hwang-Phill Kim, Sang-Hyun Song, Hongseok Yun, Sae-Won Han, Gyeong Hoon Kang, Duhee Bang, Tae-You Kim

published 07 May 2020

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De novo transcriptome sequence of Senna tora provides insights into anthraquinone biosynthesis

Sang-Ho Kang, Woo-Haeng Lee, Chang-Muk Lee, Joon-Soo Sim, So Youn Won, So-Ra Han, Soo-Jin Kwon, Jung Sun Kim, Chang-Kug Kim, Tae-Jin Oh

published 07 May 2020

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Comparative analysis of tissue-specific transcriptomic responses to nitrogen stress in spinach (Spinacia oleracea)

Vijay Joshi, Madhumita Joshi, Arianne Penalosa

published 06 May 2020

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Selection and exploitation of prevalent, tandemly repeated genomic targets for improved real-time PCR-based detection of Wuchereria bancrofti and Plasmodium falciparum in mosquitoes

Michael F. Zulch, Nils Pilotte, Jessica R. Grant, Corrado Minetti, Lisa J. Reimer, Steven A. Williams

published 01 May 2020

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Genotyping by multiplexed sequencing (GMS): A customizable platform for genomic selection

Travis M. Ruff, Elliott J. Marston, Jonathan D. Eagle, Sajal R. Sthapit, Marcus A. Hooker, Daniel Z. Skinner, Deven R. See

published 01 May 2020

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Combining signal and sequence to detect RNA polymerase initiation in ATAC-seq data

Ignacio J. Tripodi, Murad Chowdhury, Margaret Gruca, Robin D. Dowell

published 30 Apr 2020

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Benchmarking RNA-seq differential expression analysis methods using spike-in and simulation data

Bukyung Baik, Sora Yoon, Dougu Nam

published 30 Apr 2020

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Sequence count data are poorly fit by the negative binomial distribution

Stijn Hawinkel, J. C. W. Rayner, Luc Bijnens, Olivier Thas

published 30 Apr 2020

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QUATgo: Protein quaternary structural attributes predicted by two-stage machine learning approaches with heterogeneous feature encoding

Chi-Hua Tung, Ching-Hsuan Chien, Chi-Wei Chen, Lan-Ying Huang, Yu-Nan Liu, Yen-Wei Chu

published 29 Apr 2020

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Crewmember microbiome may influence microbial composition of ISS habitable surfaces

Aram Avila-Herrera, James Thissen, Camilla Urbaniak, Nicholas A. Be, David J. Smith, Fathi Karouia, Satish Mehta, Kasthuri Venkateswaran, Crystal Jaing

published 29 Apr 2020

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Combined bacterial and fungal targeted amplicon sequencing of respiratory samples: Does the DNA extraction method matter?

Cécile Angebault, Mathilde Payen, Paul-Louis Woerther, Christophe Rodriguez, Françoise Botterel

published 28 Apr 2020

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