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Sequencing techniques

ReadDepth: A Parallel R Package for Detecting Copy Number Alterations from Short Sequencing Reads

Christopher A. Miller, Oliver Hampton, Cristian Coarfa, Aleksandar Milosavljevic

Benefits and Challenges with Applying Unique Molecular Identifiers in Next Generation Sequencing to Detect Low Frequency Mutations

Ruqin Kou, Ham Lam, [ ... ], Shihong Li

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol

Vasco Elbrecht, Florian Leese

Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data

Daniel R. Mende, Alison S. Waller, [ ... ], Peer Bork

Universal Stem-Loop Primer Method for Screening and Quantification of MicroRNA

Li-hong Yang, Si-lu Wang, [ ... ], Bi-cheng Chen

Taxonomic Reliability of DNA Sequences in Public Sequence Databases: A Fungal Perspective

R. Henrik Nilsson, Martin Ryberg, [ ... ], Urmas Kõljalg

Pepper Mild Mottle Virus, a Plant Virus Associated with Specific Immune Responses, Fever, Abdominal Pains, and Pruritus in Humans

Philippe Colson, Hervé Richet, [ ... ], Didier Raoult

A Versatile Method to Design Stem-Loop Primer-Based Quantitative PCR Assays for Detecting Small Regulatory RNA Molecules

Zsolt Czimmerer, Julianna Hulvely, [ ... ], Balint L. Balint

Microbial Community Composition and Diversity via 16S rRNA Gene Amplicons: Evaluating the Illumina Platform

Lucas Sinclair, Omneya Ahmed Osman, Stefan Bertilsson, Alexander Eiler

Rapid and Highly Informative Diagnostic Assay for H5N1 Influenza Viruses

Nader Pourmand, Lisa Diamond, [ ... ], Ronald W. Davis

The Use of Coded PCR Primers Enables High-Throughput Sequencing of Multiple Homolog Amplification Products by 454 Parallel Sequencing

Jonas Binladen, M. Thomas P. Gilbert, [ ... ], Eske Willerslev

RosettaScripts: A Scripting Language Interface to the Rosetta Macromolecular Modeling Suite

Sarel J. Fleishman, Andrew Leaver-Fay, [ ... ], David Baker

Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities

Jack A. Gilbert, Dawn Field, [ ... ], Ian Joint

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