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Sequencing techniques

Pain, fatigue, and associated gene expressions over chemotherapy in patients with colorectal cancer

Weizi Wu, Aolan Li, Vijender Singh, Andrew Salner, Ming-Hui Chen, Michelle P. Judge, Xiaomei Cong, Wanli Xu

published 27 Jun 2025

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Genome-wide landscape of miRNA-mRNA-lncRNA-circRNA ceRNA network in Nanos2 deficient mice

Hongyi Li, Yuan Li, Yuting Wang, Lijian Liu, Ji Cui, Mao Zhang, Yiming Yan

published 27 Jun 2025

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Machine learning application to predict binding affinity between peptide containing non-canonical amino acids and HLA-A0201

Shan Jiang, Zhaoqian Su, Nathaniel Bloodworth, Yunchao Liu, Cristina E. Martina, David G. Harrison, Jens Meiler

published 27 Jun 2025

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Evaluation of potential of targeted sequencing through mutational signature simulation

Keisuke Kodama, Yiwei Ling, Hiroshi Ichikawa, Toshifumi Wakai, Shujiro Okuda

published 25 Jun 2025

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Optimizing genomic diversity assessments for conservation of Bromus auleticus (Trinius ex Nees) using individual and pooled sequencing

Luciana Gillman, Federico Condón, Cesar Petroli, Mercedes Rivas

published 25 Jun 2025

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A targeted approach for multiplex detection of respiratory viruses in cases with severe acute respiratory infections by nanopore sequencing

Arghavan Zebardast, Kaveh Sadeghi, Ahmad Nejati, Sevrin Zadheidar, Mohammad Hossein Najmi, Adel Abedi, Vahid Salimi, Mehdi Shabani, Jila Yavarian, Nazanin Zahra Shafiei Jandaghi, Talat Mokhtari Azad

published 25 Jun 2025

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rbpTransformer: A novel deep learning model for prediction of piRNA and mRNA bindings

Ahmet Gürhanlı

published 25 Jun 2025

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Genomic profiling in hidradenitis suppurativa: InterOmics pipeline for DNA-RNA sequencing highlights HLA variants, keratin-associated mutations and extracellular matrix alterations as contributing factors to HS pathogenesis

Lucas André Cavalcanti Brandão, Ronald Rodrigues de Moura, Bruno Rodrigo Assunção, Cecilia Del Vecchio, Adamo Pio d’Adamo, Gudrun Ratzinger, Barbara Böckle, Nina Frischhut, Wolfram Jaschke, Matthias Schmuth, Muhammad Suleman, Angelo Valerio Marzano, Chiara Moltrasio, Paola Maura Tricarico, Sergio Crovella

published 20 Jun 2025

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Short tandem repeat variants are possibly associated with RNA secondary structure and gene expression

Nick Kinney, Dikshya Pathak, Emma Evans, Paola Arias

published 18 Jun 2025

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DeepRice6mA: A convolutional neural network approach for 6mA site prediction in the rice Genome

Hussam Alsharif

published 18 Jun 2025

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Prevalence and spectrum of germline BRCA1 and BRCA2 mutations in multiethnic cohort of breast cancer patients in Brunei Darussalam

Siti Nur Idayu Matusin, Nuramalina Mumin, Hazirah Zainal Abidin, Fatin Nurizzati Mohd Jaya, Zen Huat Lu, Mas Rina Wati Haji Abdul Hamid

published 18 Jun 2025

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Global genetic diversity of Infectious Salmon Anemia Virus (ISAV) a scoping review protocol

Persia Carol Thapa, Ahsan Raquib, Kim Mears, Javier Sanchez, Sonja Saksida, Keith Larry Hammell, Krishna Kumar Thakur

published 17 Jun 2025

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TBpore cluster: A novel phylogenetic pipeline for tuberculosis transmission studies using nanopore next-generation sequencing data

Sophie Gagnon, Emmanuelle Ametepe, Floriane Point, William Cloutier Charette, Arpita Chakravarti, Paul Rivest, Pierre-Marie Akochy, Hafid Soualhine, Zamin Iqbal, Michael B. Hall, Simon Grandjean Lapierre

published 16 Jun 2025

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