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Sequencing techniques

Optimal Ancient DNA Yields from the Inner Ear Part of the Human Petrous Bone

Ron Pinhasi, Daniel Fernandes, [ ... ], Michael Hofreiter

MetaSim—A Sequencing Simulator for Genomics and Metagenomics

Daniel C. Richter, Felix Ott, [ ... ], Daniel H. Huson

Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia

Luisa W. Hugerth, Emilie E. L. Muller, [ ... ], Anders F. Andersson

Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies

Andreas Sundquist, Mostafa Ronaghi, [ ... ], Serafim Batzoglou

Whole Genome Amplification and De novo Assembly of Single Bacterial Cells

Sébastien Rodrigue, Rex R. Malmstrom, [ ... ], Sallie W. Chisholm

C. elegans Mutant Identification with a One-Step Whole-Genome-Sequencing and SNP Mapping Strategy

Maria Doitsidou, Richard J. Poole, [ ... ], Oliver Hobert

Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing

Dylan P. Smith, Kabir G. Peay

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

Mehrdad Hajibabaei, Shadi Shokralla, [ ... ], Donald J. Baird

SLAF-seq: An Efficient Method of Large-Scale De Novo SNP Discovery and Genotyping Using High-Throughput Sequencing

Xiaowen Sun, Dongyuan Liu, [ ... ], Hongkun Zheng

SeqNLS: Nuclear Localization Signal Prediction Based on Frequent Pattern Mining and Linear Motif Scoring

Jhih-rong Lin, Jianjun Hu

Common Contaminants in Next-Generation Sequencing That Hinder Discovery of Low-Abundance Microbes

Martin Laurence, Christos Hatzis, Douglas E. Brash

Development of Strategies for SNP Detection in RNA-Seq Data: Application to Lymphoblastoid Cell Lines and Evaluation Using 1000 Genomes Data

Emma M. Quinn, Paul Cormican, [ ... ], Derek W. Morris

Unlocking Short Read Sequencing for Metagenomics

Sébastien Rodrigue, Arne C. Materna, [ ... ], Sallie W. Chisholm

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